Variant report

Variant	rs16876325
Chromosome Location	chr8:108472213-108472214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11775510	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11776085	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11778162	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368497	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433169	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529747	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529748	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876280	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16876323	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876337	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16876348	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2445362	0.86[EUR][1000 genomes]
rs28419716	1.00[ASW][hapmap];0.85[YRI][hapmap]
rs2959349	0.86[EUR][1000 genomes]
rs35394445	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4570130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734971	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55721534	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59702603	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59876529	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60447751	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61269921	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61495202	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62513194	0.88[EUR][1000 genomes]
rs62513198	0.88[EUR][1000 genomes]
rs62513235	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62513237	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513238	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513239	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513242	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514470	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514471	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514472	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514473	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514474	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514476	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514477	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514478	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514480	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514481	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514482	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514485	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514486	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514488	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7463024	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108467200-108473200	Enhancers	NHDF-Ad	bronchial
2	chr8:108467400-108474600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:108468800-108472800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:108470200-108474400	Weak transcription	Psoas Muscle	Psoas
5	chr8:108470400-108474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:108470400-108474000	Weak transcription	Aorta	Aorta
7	chr8:108470600-108473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:108470600-108474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:108470600-108474200	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:108471000-108474400	Weak transcription	Fetal Kidney	kidney
11	chr8:108471000-108474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:108471200-108472400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:108471200-108472800	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:108471400-108473800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:108471600-108473400	Enhancers	Fetal Lung	lung
16	chr8:108471800-108472400	Enhancers	Osteobl	bone
17	chr8:108471800-108472800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:108471800-108473000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr8:108471800-108473200	Enhancers	Adipose Nuclei	Adipose
20	chr8:108471800-108473800	Enhancers	NHLF	lung
21	chr8:108471800-108474000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:108472000-108472600	Enhancers	Primary hematopoietic stem cells	blood
23	chr8:108472000-108473800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:108472200-108472400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:108472200-108472400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:108472200-108472400	Active TSS	Fetal Brain Male	brain
27	chr8:108472200-108472600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr8:108472200-108472800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:108472200-108473400	Enhancers	Ovary	ovary
30	chr8:108472200-108475600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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