Variant report

Variant	rs16876323
Chromosome Location	chr8:108467158-108467159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11775510	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11776085	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11778162	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433169	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433171	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16876325	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876337	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16876348	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2445362	0.88[EUR][1000 genomes]
rs2959349	0.88[EUR][1000 genomes]
rs35394445	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4570130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734971	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55721534	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59702603	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59876529	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60447751	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61269921	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61495202	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62513194	0.91[EUR][1000 genomes]
rs62513198	0.91[EUR][1000 genomes]
rs62513235	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62513237	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513238	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513239	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513242	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514471	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514472	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514473	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514474	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514476	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514477	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514478	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514480	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514481	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514482	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514485	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514486	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514488	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7463024	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108450400-108469600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:108450400-108469800	Weak transcription	Psoas Muscle	Psoas
3	chr8:108452400-108467200	Weak transcription	Fetal Lung	lung
4	chr8:108452400-108468000	Weak transcription	Aorta	Aorta
5	chr8:108457400-108467200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:108460200-108467600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:108462000-108469800	Weak transcription	HUVEC	blood vessel
8	chr8:108466400-108468000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:108466400-108468000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr8:108466600-108467200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:108466600-108467200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:108466600-108467600	Enhancers	Adipose Nuclei	Adipose
13	chr8:108466600-108469400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:108466800-108467200	Weak transcription	Ovary	ovary
15	chr8:108466800-108467400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:108466800-108468000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:108466800-108469600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:108467000-108467200	Enhancers	Colon Smooth Muscle	Colon
19	chr8:108467000-108468000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:108467000-108468000	Enhancers	NHLF	lung
21	chr8:108467000-108468000	Enhancers	Osteobl	bone
22	chr8:108467000-108468400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr8:108467000-108468800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:108467000-108469600	Weak transcription	Primary hematopoietic stem cells	blood

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