Variant report

Variant	rs62513198
Chromosome Location	chr8:108415441-108415442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11775510	0.91[EUR][1000 genomes]
rs11776085	0.91[EUR][1000 genomes]
rs11778162	0.91[EUR][1000 genomes]
rs1368497	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1433169	0.91[EUR][1000 genomes]
rs1433171	0.91[EUR][1000 genomes]
rs1529747	0.85[EUR][1000 genomes]
rs1529748	0.91[EUR][1000 genomes]
rs16876280	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16876323	0.91[EUR][1000 genomes]
rs16876325	0.88[EUR][1000 genomes]
rs16876337	0.91[EUR][1000 genomes]
rs2436560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2445362	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394445	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4570130	0.91[EUR][1000 genomes]
rs4734971	0.91[EUR][1000 genomes]
rs55721534	0.91[EUR][1000 genomes]
rs59702603	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59876529	0.88[EUR][1000 genomes]
rs60447751	0.91[EUR][1000 genomes]
rs61269921	0.91[EUR][1000 genomes]
rs61495202	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62513194	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513235	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513237	0.97[EUR][1000 genomes]
rs62513238	0.91[EUR][1000 genomes]
rs62513239	0.91[EUR][1000 genomes]
rs62513242	0.91[EUR][1000 genomes]
rs62514470	0.91[EUR][1000 genomes]
rs62514472	0.91[EUR][1000 genomes]
rs62514473	0.91[EUR][1000 genomes]
rs62514474	0.91[EUR][1000 genomes]
rs62514476	0.91[EUR][1000 genomes]
rs62514477	0.91[EUR][1000 genomes]
rs62514478	0.91[EUR][1000 genomes]
rs62514480	0.91[EUR][1000 genomes]
rs62514481	0.91[EUR][1000 genomes]
rs62514482	0.91[EUR][1000 genomes]
rs62514485	0.91[EUR][1000 genomes]
rs62514486	0.91[EUR][1000 genomes]
rs62514488	0.91[EUR][1000 genomes]
rs7463024	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108399800-108421000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:108410400-108419000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:108413800-108419200	Weak transcription	Fetal Lung	lung
4	chr8:108414400-108419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:108414600-108415800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:108414800-108416200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:108414800-108419200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:108414800-108419400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:108414800-108419600	Weak transcription	Osteobl	bone
10	chr8:108415000-108419800	Weak transcription	NHDF-Ad	bronchial
11	chr8:108415200-108415600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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