Variant report

Variant	rs62514470
Chromosome Location	chr8:108473925-108473926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11775510	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11776085	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11778162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368497	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433169	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433171	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529747	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876280	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16876323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876325	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876337	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16876348	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2445362	0.88[EUR][1000 genomes]
rs2959349	0.88[EUR][1000 genomes]
rs35394445	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4570130	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55721534	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59702603	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59876529	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60447751	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61269921	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61495202	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62513194	0.91[EUR][1000 genomes]
rs62513198	0.91[EUR][1000 genomes]
rs62513235	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62513237	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513238	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513239	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62513242	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514471	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514473	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514474	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514476	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514477	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514478	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514480	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514481	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514482	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514485	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514486	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514488	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7463024	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108467400-108474600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:108470200-108474400	Weak transcription	Psoas Muscle	Psoas
3	chr8:108470400-108474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:108470400-108474000	Weak transcription	Aorta	Aorta
5	chr8:108470600-108474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:108470600-108474200	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:108471000-108474400	Weak transcription	Fetal Kidney	kidney
8	chr8:108471000-108474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:108471800-108474000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:108472200-108475600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:108472400-108474200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:108472600-108474000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:108472600-108474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:108472800-108474000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:108473000-108474400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:108473200-108474200	Weak transcription	NHDF-Ad	bronchial
17	chr8:108473200-108479800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:108473400-108474200	Enhancers	Osteobl	bone
19	chr8:108473400-108474400	Weak transcription	Ovary	ovary
20	chr8:108473400-108474600	Weak transcription	Fetal Lung	lung
21	chr8:108473600-108474200	Enhancers	Adipose Nuclei	Adipose
22	chr8:108473800-108474000	Enhancers	Stomach Smooth Muscle	stomach
23	chr8:108473800-108474000	Flanking Active TSS	NHLF	lung
24	chr8:108473800-108474600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:108473800-108474600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:108473800-108474800	Enhancers	Rectal Smooth Muscle	rectum
27	chr8:108473800-108475400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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