Variant report

Variant	rs62514471
Chromosome Location	chr8:108475517-108475518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11775510	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776085	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11778162	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433169	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1433171	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1529747	0.86[ASN][1000 genomes]
rs1529748	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16876323	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16876325	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16876337	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16876348	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4570130	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734971	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55721534	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59876529	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60447751	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61269921	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513237	0.86[ASN][1000 genomes]
rs62513238	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513239	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513242	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62514470	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514472	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514473	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514474	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514476	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514477	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514478	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514480	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514481	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514482	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514485	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514486	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514488	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7463024	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108472200-108475600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:108473200-108479800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:108474400-108475600	Enhancers	Ovary	ovary
4	chr8:108474800-108477200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:108474800-108481000	Weak transcription	Aorta	Aorta
6	chr8:108474800-108483400	Weak transcription	Psoas Muscle	Psoas
7	chr8:108475200-108481200	Weak transcription	Fetal Lung	lung
8	chr8:108475200-108481800	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:108475400-108476400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:108475400-108476800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:108475400-108481800	Weak transcription	Osteobl	bone

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