Variant report

Variant	rs1529748
Chromosome Location	chr8:108447733-108447734
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108445880..108448507-chr8:108640735..108642972,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11775510	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776085	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11778162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1368497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1433169	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1433171	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1529747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16876323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876325	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876337	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16876348	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2445362	0.88[EUR][1000 genomes]
rs2959349	0.88[EUR][1000 genomes]
rs35394445	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4570130	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55721534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59702603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59876529	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60447751	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61269921	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61495202	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513194	0.91[EUR][1000 genomes]
rs62513198	0.91[EUR][1000 genomes]
rs62513235	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62513237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513238	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514470	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514471	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62514472	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514473	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514474	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514476	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514477	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514478	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514480	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514481	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514482	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514485	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514486	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514488	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7463024	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108421800-108448200	Weak transcription	Psoas Muscle	Psoas
2	chr8:108434000-108449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:108438800-108448400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:108439800-108449800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:108440600-108452000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:108441400-108449800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:108441800-108455400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:108442000-108448400	Weak transcription	Aorta	Aorta
9	chr8:108442000-108449800	Weak transcription	Small Intestine	intestine
10	chr8:108442400-108448400	Weak transcription	Adipose Nuclei	Adipose
11	chr8:108442800-108447800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:108442800-108448200	Weak transcription	NHDF-Ad	bronchial
13	chr8:108442800-108448400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:108442800-108450000	Weak transcription	Osteobl	bone
15	chr8:108443000-108451800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:108443200-108449400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:108443400-108448400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:108443400-108448800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:108443600-108449000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:108443800-108448600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:108444000-108448800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:108444000-108448800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr8:108444000-108449600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:108445400-108448600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:108446200-108449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:108446400-108447800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:108446400-108448000	Enhancers	Fetal Kidney	kidney
28	chr8:108447200-108455400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:108447400-108447800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:108447400-108450000	Enhancers	Rectal Smooth Muscle	rectum
31	chr8:108447600-108447800	Enhancers	Colon Smooth Muscle	Colon
32	chr8:108447600-108448000	Enhancers	Dnd41	blood
33	chr8:108447600-108448200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr8:108447600-108448400	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:108447600-108448800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr8:108447600-108449000	Enhancers	Ovary	ovary
37	chr8:108447600-108451400	Enhancers	Primary hematopoietic stem cells	blood

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