Variant report

Variant	rs35394445
Chromosome Location	chr8:108436880-108436881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11775510	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11776085	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11778162	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1368497	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433169	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433171	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529747	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529748	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16876280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876323	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16876325	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16876337	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16876348	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2436560	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2445362	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2959349	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4570130	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734971	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55721534	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59702603	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59876529	0.91[EUR][1000 genomes]
rs60447751	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61269921	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61495202	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62513194	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513198	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513235	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513237	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62513238	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62513239	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62513242	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62514470	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62514472	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514473	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514474	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514476	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514477	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514478	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514480	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514481	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514482	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514485	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514486	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514488	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7463024	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108420200-108441400	Weak transcription	Aorta	Aorta
2	chr8:108421800-108448200	Weak transcription	Psoas Muscle	Psoas
3	chr8:108432800-108437000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:108433800-108440400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:108433800-108440400	Weak transcription	NHLF	lung
6	chr8:108434000-108437800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:108434000-108437800	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:108434000-108438000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:108434000-108438200	Weak transcription	Right Atrium	heart
10	chr8:108434000-108440400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:108434000-108449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:108434200-108437800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:108434200-108437800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:108434200-108441400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:108434400-108438000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:108434400-108438400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:108434600-108438000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:108434600-108438000	Weak transcription	Osteobl	bone
19	chr8:108434600-108438200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:108434600-108440200	Weak transcription	NHDF-Ad	bronchial
21	chr8:108434800-108437800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:108434800-108438200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:108435800-108437600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:108435800-108437800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:108435800-108437800	Weak transcription	Fetal Stomach	stomach
26	chr8:108435800-108437800	Weak transcription	Ovary	ovary
27	chr8:108435800-108438000	Weak transcription	Adipose Nuclei	Adipose
28	chr8:108435800-108438000	Weak transcription	Fetal Kidney	kidney
29	chr8:108435800-108438400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:108435800-108439400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:108436000-108437400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:108436000-108437800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:108436000-108437800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:108436000-108437800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:108436000-108439600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr8:108436000-108442600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr8:108436800-108437400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:108436800-108437800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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