Variant report

Variant	rs2445362
Chromosome Location	chr8:108397971-108397972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11775510	0.88[EUR][1000 genomes]
rs11776085	0.88[EUR][1000 genomes]
rs11778162	0.88[EUR][1000 genomes]
rs1368497	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1433169	0.88[EUR][1000 genomes]
rs1433171	0.88[EUR][1000 genomes]
rs1529747	0.82[EUR][1000 genomes]
rs1529748	0.88[EUR][1000 genomes]
rs16876280	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16876323	0.88[EUR][1000 genomes]
rs16876325	0.86[EUR][1000 genomes]
rs16876337	0.88[EUR][1000 genomes]
rs2436560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394445	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4570130	0.88[EUR][1000 genomes]
rs4734971	0.88[EUR][1000 genomes]
rs55721534	0.88[EUR][1000 genomes]
rs59702603	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59876529	0.86[EUR][1000 genomes]
rs60447751	0.88[EUR][1000 genomes]
rs61269921	0.88[EUR][1000 genomes]
rs61495202	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62513194	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513198	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513235	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513237	0.94[EUR][1000 genomes]
rs62513238	0.88[EUR][1000 genomes]
rs62513239	0.88[EUR][1000 genomes]
rs62513242	0.88[EUR][1000 genomes]
rs62514470	0.88[EUR][1000 genomes]
rs62514472	0.88[EUR][1000 genomes]
rs62514473	0.88[EUR][1000 genomes]
rs62514474	0.88[EUR][1000 genomes]
rs62514476	0.88[EUR][1000 genomes]
rs62514477	0.88[EUR][1000 genomes]
rs62514478	0.88[EUR][1000 genomes]
rs62514480	0.88[EUR][1000 genomes]
rs62514481	0.88[EUR][1000 genomes]
rs62514482	0.88[EUR][1000 genomes]
rs62514485	0.88[EUR][1000 genomes]
rs62514486	0.88[EUR][1000 genomes]
rs62514488	0.88[EUR][1000 genomes]
rs7463024	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
2	chr8:108393800-108398200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:108394000-108401400	Weak transcription	Ovary	ovary
4	chr8:108395800-108399600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:108396000-108399400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:108396200-108414000	Weak transcription	Osteobl	bone
7	chr8:108396800-108398000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr8:108397000-108398000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr8:108397400-108399400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:108397600-108398000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:108397600-108399200	Weak transcription	Fetal Lung	lung
12	chr8:108397800-108398600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:108397800-108398800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:108397800-108399600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:108397800-108399600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:108397800-108399800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:108397800-108399800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:108397800-108400000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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