Variant report

Variant	rs28420113
Chromosome Location	chr15:58666472-58666473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12591174	0.94[ASN][1000 genomes]
rs12591717	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593594	0.94[ASN][1000 genomes]
rs12594877	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595797	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16940111	0.84[AFR][1000 genomes]
rs16940115	0.84[AFR][1000 genomes]
rs261327	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs261328	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs261330	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs261331	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28405107	0.84[AFR][1000 genomes]
rs28420473	0.94[ASN][1000 genomes]
rs28429288	0.84[AFR][1000 genomes]
rs28449499	0.84[AFR][1000 genomes]
rs28590223	0.84[AFR][1000 genomes]
rs28621988	0.84[AFR][1000 genomes]
rs28668323	0.84[AFR][1000 genomes]
rs28706087	0.84[AFR][1000 genomes]
rs453179	0.86[EUR][1000 genomes]
rs57309903	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57332180	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57904600	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60890108	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61040482	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7176512	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9920110	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58662400-58666600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:58662400-58667000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:58662400-58667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:58665400-58667200	Enhancers	HSMMtube	muscle
5	chr15:58666000-58668600	Enhancers	Fetal Kidney	kidney
6	chr15:58666200-58666800	Enhancers	Colon Smooth Muscle	Colon
7	chr15:58666200-58667000	Enhancers	HSMM	muscle
8	chr15:58666400-58667600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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