Variant report

Variant	rs28420226
Chromosome Location	chr8:107404966-107404967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10087201	0.90[AFR][1000 genomes]
rs10087258	0.95[AFR][1000 genomes]
rs16874491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874519	0.90[AFR][1000 genomes]
rs28678972	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60330002	1.00[AMR][1000 genomes]
rs61381952	1.00[AMR][1000 genomes]
rs73699598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107362400-107427000	Weak transcription	Aorta	Aorta
2	chr8:107374400-107409800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:107398200-107409400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107403400-107405600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:107403800-107405800	Enhancers	NHDF-Ad	bronchial
6	chr8:107404000-107405000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:107404200-107405400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:107404200-107409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:107404400-107405000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:107404400-107405400	Enhancers	Fetal Intestine Small	intestine
11	chr8:107404400-107405600	Enhancers	NH-A	brain
12	chr8:107404400-107406000	Enhancers	HUVEC	blood vessel
13	chr8:107404400-107447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:107404600-107405400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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