Variant report

Variant	rs73699598
Chromosome Location	chr8:107605092-107605093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16874491	1.00[AMR][1000 genomes]
rs28420226	1.00[AMR][1000 genomes]
rs28678972	1.00[AMR][1000 genomes]
rs28921431	1.00[AMR][1000 genomes]
rs28923768	1.00[AMR][1000 genomes]
rs58367828	1.00[AMR][1000 genomes]
rs60330002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699977	1.00[AMR][1000 genomes]
rs73700000	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107602200-107606000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:107604000-107605400	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:107604200-107605200	Enhancers	Primary B cells from cord blood	blood
10	chr8:107604200-107606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:107604400-107605200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr8:107604400-107606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:107604400-107606600	Weak transcription	Fetal Kidney	kidney
14	chr8:107604600-107605600	Enhancers	Fetal Thymus	thymus
15	chr8:107605000-107605200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:107605000-107605400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:107605000-107607800	Weak transcription	GM12878-XiMat	blood
18	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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