Variant report

Variant	rs28921431
Chromosome Location	chr8:107725335-107725336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28923768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58367828	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60330002	1.00[AMR][1000 genomes]
rs73699598	1.00[AMR][1000 genomes]
rs73699977	1.00[AMR][1000 genomes]
rs73700000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702405	0.86[AFR][1000 genomes]
rs73702412	0.86[AFR][1000 genomes]
rs73702419	0.86[AFR][1000 genomes]
rs73702420	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
7	chr8:107695000-107725800	Weak transcription	NHLF	lung
8	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:107708800-107725600	Weak transcription	Fetal Brain Male	brain
12	chr8:107710400-107725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
17	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:107717800-107726000	Weak transcription	Brain Substantia Nigra	brain
19	chr8:107718000-107728600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr8:107718600-107726400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:107718600-107727600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:107719000-107738200	Weak transcription	NHEK	skin
23	chr8:107719200-107725400	Weak transcription	Pancreas	Pancrea
24	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
25	chr8:107719400-107725400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:107719600-107725400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:107719600-107726200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:107719600-107729800	Weak transcription	Spleen	Spleen
29	chr8:107719600-107731000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:107719600-107732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:107719600-107737000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:107719600-107737400	Weak transcription	Psoas Muscle	Psoas
33	chr8:107719600-107738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:107719600-107738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:107719600-107738400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr8:107719600-107739600	Weak transcription	Left Ventricle	heart
37	chr8:107719600-107762400	Weak transcription	Lung	lung
38	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
39	chr8:107719600-107775200	Weak transcription	Gastric	stomach
40	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
41	chr8:107719800-107730200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr8:107719800-107731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr8:107719800-107738200	Weak transcription	Ovary	ovary
44	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr8:107720000-107725800	Weak transcription	Hela-S3	cervix
46	chr8:107720000-107732400	Weak transcription	HepG2	liver
47	chr8:107720000-107738200	Weak transcription	HMEC	breast
48	chr8:107720600-107738200	Weak transcription	Aorta	Aorta
49	chr8:107720600-107738200	Weak transcription	Fetal Stomach	stomach
50	chr8:107720600-107738400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links