Variant report

Variant	rs73702412
Chromosome Location	chr8:107798623-107798624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28921405	0.83[AFR][1000 genomes]
rs28921431	0.86[AFR][1000 genomes]
rs28923768	0.86[AFR][1000 genomes]
rs55747837	1.00[AMR][1000 genomes]
rs58418655	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58460753	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59971784	0.86[AFR][1000 genomes]
rs60089085	1.00[AMR][1000 genomes]
rs73699911	1.00[AMR][1000 genomes]
rs73699978	1.00[AMR][1000 genomes]
rs73700000	0.86[AFR][1000 genomes]
rs73700001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702405	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702429	0.86[AFR][1000 genomes]
rs73702430	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107792200-107803600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:107797200-107799800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:107797600-107799600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:107798000-107799600	Enhancers	Adipose Nuclei	Adipose
5	chr8:107798200-107799600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:107798200-107799600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:107798400-107798800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:107798400-107799400	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links