Variant report

Variant	rs58460753
Chromosome Location	chr8:107823117-107823118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107823015..107825825-chr8:107828969..107830508,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55747837	1.00[AMR][1000 genomes]
rs55872704	0.86[AFR][1000 genomes]
rs56330800	0.86[AFR][1000 genomes]
rs57307676	0.87[AFR][1000 genomes]
rs58418655	1.00[AMR][1000 genomes]
rs59971784	0.95[AFR][1000 genomes]
rs60089085	1.00[AMR][1000 genomes]
rs73699911	1.00[AMR][1000 genomes]
rs73699978	1.00[AMR][1000 genomes]
rs73700001	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702405	1.00[AMR][1000 genomes]
rs73702412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702420	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702429	0.95[AFR][1000 genomes]
rs73702430	0.95[AFR][1000 genomes]
rs73702432	0.87[AFR][1000 genomes]
rs73702437	0.86[AFR][1000 genomes]
rs73702438	0.86[AFR][1000 genomes]
rs73702439	0.86[AFR][1000 genomes]
rs73702441	0.86[AFR][1000 genomes]
rs73702442	0.86[AFR][1000 genomes]
rs73702443	0.86[AFR][1000 genomes]
rs73702444	0.86[AFR][1000 genomes]
rs73702445	0.86[AFR][1000 genomes]
rs73702449	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv523126	chr8:107817656-107823148	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv516791	chr8:107817846-107823148	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107814800-107823400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:107821200-107825400	Weak transcription	Fetal Heart	heart
3	chr8:107822800-107823400	Enhancers	Adipose Nuclei	Adipose
4	chr8:107822800-107826000	Enhancers	Skeletal Muscle Male	skeletal muscle

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