Variant report

Variant	rs73702439
Chromosome Location	chr8:107845460-107845461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:107774167..107775128-chr8:107845360..107846184,2	K562	blood:
2	chr20:46012813..46013377-chr8:107845402..107845925,2	MCF-7	breast:
3	chr8:107844267..107847790-chr8:107864374..107867207,3	MCF-7	breast:
4	chr8:107841111..107842679-chr8:107845386..107847419,2	MCF-7	breast:
5	chr8:107777004..107778114-chr8:107845048..107846673,7	MCF-7	breast:
6	chr8:107777185..107778453-chr8:107844735..107846577,8	MCF-7	breast:
7	chr8:107775145..107775930-chr8:107845378..107846271,5	MCF-7	breast:
8	chr8:107774998..107776443-chr8:107844921..107846410,11	MCF-7	breast:

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55872704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56330800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57307676	0.82[AFR][1000 genomes]
rs57554448	0.91[AFR][1000 genomes]
rs58126584	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58460753	0.86[AFR][1000 genomes]
rs59901092	0.86[AFR][1000 genomes]
rs59971784	0.90[AFR][1000 genomes]
rs61325818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699640	1.00[AMR][1000 genomes]
rs73702429	0.90[AFR][1000 genomes]
rs73702430	0.90[AFR][1000 genomes]
rs73702432	0.82[AFR][1000 genomes]
rs73702436	0.91[AFR][1000 genomes]
rs73702437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702440	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702449	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv891264	chr8:107823559-107852506	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv465756	chr8:107838892-107872577	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv611847	chr8:107838892-107872577	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107844200-107845600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:107845400-107845600	Enhancers	Fetal Kidney	kidney
3	chr8:107845400-107847400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links