Variant report

Variant	rs73699911
Chromosome Location	chr8:107660830-107660831
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55747837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58418655	1.00[AMR][1000 genomes]
rs58460753	1.00[AMR][1000 genomes]
rs60089085	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699977	0.85[AFR][1000 genomes]
rs73699978	1.00[AMR][1000 genomes]
rs73700001	1.00[AMR][1000 genomes]
rs73702405	1.00[AMR][1000 genomes]
rs73702412	1.00[AMR][1000 genomes]
rs73702419	1.00[AMR][1000 genomes]
rs73702420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107648600-107662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:107657800-107661200	Weak transcription	Stomach Mucosa	stomach
4	chr8:107658000-107661200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:107658200-107668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:107658600-107668600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:107660200-107661000	Enhancers	Liver	Liver
8	chr8:107660600-107666400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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