Variant report

Variant	rs60089085
Chromosome Location	chr8:107620848-107620849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107620227..107620997-chr8:107635963..107636467,2	MCF-7	breast:
2	chr8:107617562..107623335-chr8:107668202..107671640,8	MCF-7	breast:
3	chr8:107618803..107621024-chr8:107635376..107637603,2	MCF-7	breast:
4	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55747837	1.00[AMR][1000 genomes]
rs58418655	1.00[AMR][1000 genomes]
rs58460753	1.00[AMR][1000 genomes]
rs73699911	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699978	1.00[AMR][1000 genomes]
rs73700001	1.00[AMR][1000 genomes]
rs73702405	1.00[AMR][1000 genomes]
rs73702412	1.00[AMR][1000 genomes]
rs73702419	1.00[AMR][1000 genomes]
rs73702420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:107617000-107623400	Weak transcription	Right Atrium	heart
4	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107618000-107623800	Enhancers	Stomach Mucosa	stomach
7	chr8:107618200-107621400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107618400-107621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:107618600-107621200	Enhancers	Liver	Liver
10	chr8:107618800-107621400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107619200-107621200	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:107619400-107621000	Enhancers	Placenta	Placenta
13	chr8:107619400-107621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:107619400-107621400	Flanking Active TSS	GM12878-XiMat	blood
15	chr8:107619800-107621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:107619800-107621000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:107619800-107621200	Weak transcription	Fetal Lung	lung
18	chr8:107619800-107622000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr8:107619800-107622400	Weak transcription	Brain Angular Gyrus	brain
20	chr8:107619800-107622600	Weak transcription	Fetal Kidney	kidney
21	chr8:107619800-107625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:107620000-107621400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr8:107620000-107623000	Weak transcription	Fetal Heart	heart
24	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
25	chr8:107620200-107621600	Enhancers	Fetal Intestine Large	intestine
26	chr8:107620200-107621600	Enhancers	Fetal Intestine Small	intestine
27	chr8:107620400-107621000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr8:107620400-107621400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:107620400-107621600	Flanking Active TSS	HMEC	breast
30	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
31	chr8:107620600-107621000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr8:107620600-107621000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:107620600-107621200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:107620600-107621200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:107620600-107621200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr8:107620600-107621400	Enhancers	Brain Cingulate Gyrus	brain
37	chr8:107620600-107622800	Weak transcription	Esophagus	oesophagus
38	chr8:107620600-107622800	Weak transcription	Gastric	stomach
39	chr8:107620800-107621000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:107620800-107621000	Enhancers	NHEK	skin
41	chr8:107620800-107621200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr8:107620800-107621200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr8:107620800-107621200	Enhancers	Osteobl	bone
44	chr8:107620800-107621400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr8:107620800-107621600	Enhancers	HepG2	liver
46	chr8:107620800-107622000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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