Variant report

Variant	rs28923768
Chromosome Location	chr8:107754920-107754921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107748936..107750658-chr8:107752847..107755089,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28921431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58367828	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60330002	1.00[AMR][1000 genomes]
rs73699598	1.00[AMR][1000 genomes]
rs73699977	1.00[AMR][1000 genomes]
rs73700000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702405	0.86[AFR][1000 genomes]
rs73702412	0.86[AFR][1000 genomes]
rs73702419	0.86[AFR][1000 genomes]
rs73702420	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
9	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:107739000-107775200	Weak transcription	A549	lung
12	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
13	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
14	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:107740000-107775200	Weak transcription	Ovary	ovary
16	chr8:107740200-107755400	Weak transcription	Thymus	Thymus
17	chr8:107740200-107767400	Weak transcription	K562	blood
18	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
19	chr8:107740400-107755200	Weak transcription	Brain Angular Gyrus	brain
20	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
21	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
22	chr8:107747000-107756000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
25	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr8:107748800-107755400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr8:107749400-107756000	Weak transcription	NHDF-Ad	bronchial
31	chr8:107749400-107756200	Weak transcription	NH-A	brain
32	chr8:107749400-107756200	Weak transcription	Osteobl	bone
33	chr8:107749400-107775200	Weak transcription	HMEC	breast
34	chr8:107749600-107756600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr8:107750200-107755000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:107751400-107756400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:107751400-107756600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:107751400-107757000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr8:107751400-107757200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr8:107751400-107757400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr8:107751400-107758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:107751600-107755400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr8:107751600-107756600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr8:107751600-107756600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr8:107751600-107756600	Strong transcription	Liver	Liver
49	chr8:107751600-107756600	Strong transcription	Fetal Lung	lung
50	chr8:107751600-107757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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