Variant report

Variant	rs60330002
Chromosome Location	chr8:107606046-107606047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:
2	chr8:107603766..107606561-chr8:107668197..107669821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16874491	1.00[AMR][1000 genomes]
rs28420226	1.00[AMR][1000 genomes]
rs28678972	1.00[AMR][1000 genomes]
rs28921431	1.00[AMR][1000 genomes]
rs28923768	1.00[AMR][1000 genomes]
rs58367828	1.00[AMR][1000 genomes]
rs73699598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699977	1.00[AMR][1000 genomes]
rs73700000	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107604200-107606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:107604400-107606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107604400-107606600	Weak transcription	Fetal Kidney	kidney
10	chr8:107605000-107607800	Weak transcription	GM12878-XiMat	blood
11	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:107605200-107609200	Weak transcription	Primary B cells from cord blood	blood
13	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:107605400-107606600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:107605600-107609200	Weak transcription	Fetal Thymus	thymus
18	chr8:107606000-107606800	Enhancers	Stomach Smooth Muscle	stomach
19	chr8:107606000-107607400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:107606000-107607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr8:107606000-107607600	Enhancers	Fetal Heart	heart

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