The 2.0 version of rSNPBase

Variant report

Variant rs28420235
Chromosome Location chr15:58975211-58975212
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:58905000-58983200 Weak transcription Esophagus oesophagus
2 chr15:58905600-58976400 Weak transcription Gastric stomach
3 chr15:58906400-58976400 Weak transcription Small Intestine intestine
4 chr15:58921600-58976600 Weak transcription Right Ventricle heart
5 chr15:58923400-58982800 Weak transcription Lung lung
6 chr15:58933000-58987000 Weak transcription Rectal Smooth Muscle rectum
7 chr15:58934200-58976400 Weak transcription Psoas Muscle Psoas
8 chr15:58936000-58977000 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr15:58936200-58991400 Weak transcription HMEC breast
10 chr15:58947800-58976400 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr15:58949400-58976400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr15:58951200-58987000 Weak transcription NHEK skin
13 chr15:58951600-58976400 Weak transcription GM12878-XiMat blood
14 chr15:58951600-58981800 Weak transcription Fetal Brain Male brain
15 chr15:58955200-58976400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr15:58955200-58988400 Weak transcription Fetal Muscle Trunk muscle
17 chr15:58955400-58976200 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr15:58956600-58984400 Weak transcription Duodenum Mucosa Duodenum
19 chr15:58956600-58984600 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr15:58956600-58987400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr15:58956800-58980000 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr15:58956800-58982000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr15:58957000-58976600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr15:58957400-58984400 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr15:58957600-58989200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr15:58958800-58989000 Weak transcription Placenta Amnion Placenta Amnion
27 chr15:58959600-58976400 Weak transcription NH-A brain
28 chr15:58960200-58976400 Weak transcription HSMMtube muscle
29 chr15:58960400-58976400 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr15:58960400-58982800 Weak transcription Aorta Aorta
31 chr15:58960400-58989600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr15:58961400-58976400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr15:58961600-58987200 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr15:58961800-58976400 Weak transcription Brain Anterior Caudate brain
35 chr15:58961800-58976400 Weak transcription NHLF lung
36 chr15:58961800-58976600 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr15:58961800-58984600 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr15:58962000-58986800 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr15:58962000-58987200 Weak transcription Fetal Lung lung
40 chr15:58962200-58975800 Weak transcription K562 blood
41 chr15:58965400-58976600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr15:58968200-58976400 Weak transcription Hela-S3 cervix
43 chr15:58968200-58984000 Weak transcription Brain Germinal Matrix brain
44 chr15:58968400-58987000 Weak transcription Fetal Kidney kidney
45 chr15:58968600-58976200 Weak transcription Liver Liver
46 chr15:58969000-58976200 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr15:58969200-58976400 Weak transcription Primary hematopoietic stem cells blood
48 chr15:58969200-58984200 Weak transcription Fetal Intestine Large intestine
49 chr15:58970400-58976400 Weak transcription Brain Hippocampus Middle brain
50 chr15:58970600-58987200 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015