Variant report

Variant	rs56044573
Chromosome Location	chr15:58908001-58908002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12102264	0.98[ASN][1000 genomes]
rs16940594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16940629	0.98[ASN][1000 genomes]
rs28420235	0.86[ASN][1000 genomes]
rs56063727	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57887445	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58335185	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59962817	0.87[EUR][1000 genomes]
rs60944445	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7180487	0.96[ASN][1000 genomes]
rs74017263	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74017267	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74017282	0.82[ASN][1000 genomes]
rs74017291	0.86[ASN][1000 genomes]
rs8028647	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8039750	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:58889800-58918800	Weak transcription	Osteobl	bone
5	chr15:58889800-58921000	Weak transcription	Ovary	ovary
6	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:58900200-58908400	Weak transcription	Hela-S3	cervix
9	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:58901600-58913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:58902800-58911200	Weak transcription	HMEC	breast
12	chr15:58903200-58913400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:58903400-58918600	Weak transcription	HUVEC	blood vessel
14	chr15:58903800-58914200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:58904800-58913600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:58905000-58908600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr15:58905000-58910400	Weak transcription	Right Ventricle	heart
18	chr15:58905000-58920800	Weak transcription	Left Ventricle	heart
19	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
20	chr15:58905200-58908600	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr15:58905200-58909000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:58905200-58909000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:58905400-58908400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr15:58905400-58912000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:58905400-58919000	Weak transcription	NHEK	skin
26	chr15:58905400-58919600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:58905400-58971800	Weak transcription	Spleen	Spleen
28	chr15:58905600-58919800	Weak transcription	Stomach Mucosa	stomach
29	chr15:58905600-58976400	Weak transcription	Gastric	stomach
30	chr15:58906000-58908200	ZNF genes & repeats	Fetal Thymus	thymus
31	chr15:58906000-58908400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr15:58906000-58908600	ZNF genes & repeats	GM12878-XiMat	blood
33	chr15:58906000-58908800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:58906000-58908800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr15:58906000-58914000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:58906200-58908200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
37	chr15:58906200-58908600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:58906200-58908800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr15:58906400-58909200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:58906400-58911800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:58906400-58915200	Weak transcription	HSMMtube	muscle
42	chr15:58906400-58920000	Weak transcription	Colonic Mucosa	Colon
43	chr15:58906400-58923000	Weak transcription	Pancreas	Pancrea
44	chr15:58906400-58976400	Weak transcription	Small Intestine	intestine
45	chr15:58906600-58908600	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr15:58906600-58908600	ZNF genes & repeats	Dnd41	blood
47	chr15:58906600-58909000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr15:58907000-58913600	Weak transcription	Fetal Kidney	kidney
49	chr15:58907000-58918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:58907200-58908200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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