Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58868577..58870503-chr15:58875385..58877365,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12102264	0.81[ASN][1000 genomes]
rs16940594	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16940629	0.81[ASN][1000 genomes]
rs16940725	0.87[EUR][1000 genomes]
rs17236229	0.87[EUR][1000 genomes]
rs56044573	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56063727	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57887445	1.00[AMR][1000 genomes]
rs58102191	0.87[EUR][1000 genomes]
rs59962817	1.00[EUR][1000 genomes]
rs60944445	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7176539	0.87[EUR][1000 genomes]
rs7177823	0.87[EUR][1000 genomes]
rs720273	0.87[EUR][1000 genomes]
rs74017263	1.00[AMR][1000 genomes]
rs74017267	1.00[AMR][1000 genomes]
rs74017299	0.87[EUR][1000 genomes]
rs74021003	0.87[EUR][1000 genomes]
rs74021004	0.87[EUR][1000 genomes]
rs8027622	0.87[EUR][1000 genomes]
rs8028647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58870000-58870200	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search: