Variant report

Variant	rs7176539
Chromosome Location	chr15:59029723-59029724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59025413..59026960-chr15:59029067..59030744,2	K562	blood:
2	chr15:59028939..59031990-chr15:59040702..59043851,4	K562	blood:
3	chr15:59029139..59031905-chr15:59037322..59039865,2	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12102264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs16940594	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs16940629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[YRI][hapmap]
rs16940682	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16940684	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16940725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17236229	0.83[ASN][1000 genomes]
rs28420235	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57887445	0.80[ASN][1000 genomes]
rs58102191	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58335185	0.87[EUR][1000 genomes]
rs59962817	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7168421	1.00[CEU][hapmap]
rs7172364	1.00[CEU][hapmap]
rs7177823	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180487	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs720273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74017282	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74017291	0.80[ASN][1000 genomes]
rs74017299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74021003	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74021004	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026646	1.00[CEU][hapmap]
rs8027622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8039750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:59009800-59035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:59010800-59031200	Weak transcription	Dnd41	blood
4	chr15:59013200-59030200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:59013400-59029800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:59016800-59034200	Weak transcription	Brain Germinal Matrix	brain
7	chr15:59017200-59034400	Weak transcription	Fetal Kidney	kidney
8	chr15:59022200-59040200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:59022600-59034800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:59022600-59038600	Weak transcription	Fetal Brain Female	brain
11	chr15:59023000-59030400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:59023600-59040000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:59024000-59038200	Weak transcription	Fetal Stomach	stomach
14	chr15:59024200-59034600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:59024400-59029800	Weak transcription	Hela-S3	cervix
16	chr15:59024400-59029800	Weak transcription	HUVEC	blood vessel
17	chr15:59024400-59030000	Weak transcription	NHLF	lung
18	chr15:59024400-59030600	Weak transcription	Ovary	ovary
19	chr15:59024400-59032400	Weak transcription	Lung	lung
20	chr15:59024400-59035200	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:59024600-59029800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:59024600-59029800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:59024600-59029800	Weak transcription	HSMM	muscle
24	chr15:59024600-59031800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:59024600-59033200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:59024600-59034400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:59024800-59030000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:59025400-59029800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr15:59025400-59030200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:59025400-59030200	Weak transcription	NH-A	brain
31	chr15:59025400-59030400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:59025600-59029800	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:59025600-59029800	Weak transcription	NHDF-Ad	bronchial
34	chr15:59025600-59032200	Weak transcription	Placenta	Placenta
35	chr15:59025600-59032400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:59025600-59032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:59025600-59032400	Weak transcription	Right Ventricle	heart
38	chr15:59025600-59035200	Weak transcription	Psoas Muscle	Psoas
39	chr15:59025600-59038200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:59025600-59038200	Weak transcription	Gastric	stomach
41	chr15:59025600-59040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:59025800-59029800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:59025800-59030200	Weak transcription	Brain Angular Gyrus	brain
44	chr15:59025800-59030400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:59025800-59031200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:59025800-59032200	Weak transcription	Fetal Thymus	thymus
47	chr15:59025800-59033600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:59025800-59034400	Weak transcription	HSMMtube	muscle
49	chr15:59025800-59034600	Weak transcription	Thymus	Thymus
50	chr15:59025800-59034600	Weak transcription	Spleen	Spleen

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