Variant report

Variant	rs28427123
Chromosome Location	chr15:58861789-58861790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58860510..58864232-chr15:58873033..58877399,5	K562	blood:
2	chr15:58860633..58862696-chr15:58874289..58877097,2	MCF-7	breast:
3	chr15:58813787..58816646-chr15:58861427..58864530,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11071391	0.83[AMR][1000 genomes]
rs12437457	0.84[AMR][1000 genomes]
rs12901989	0.81[AMR][1000 genomes]
rs12906714	0.83[AMR][1000 genomes]
rs12907237	0.83[AMR][1000 genomes]
rs12908645	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12913969	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12917577	0.83[AMR][1000 genomes]
rs17301857	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17301864	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2242063	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2242066	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28458188	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28515698	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28524122	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28569241	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28602186	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28722857	0.84[AMR][1000 genomes]
rs36017602	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6074	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62005260	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174414	0.81[AMR][1000 genomes]
rs871804	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1050231	chr15:58848727-58863526	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1043560	chr15:58851369-58863526	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58853200-58865000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:58854600-58864200	Weak transcription	HepG2	liver
3	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58857800-58862800	Weak transcription	Colonic Mucosa	Colon
5	chr15:58859000-58865600	Weak transcription	Liver	Liver
6	chr15:58860600-58861800	Weak transcription	Pancreas	Pancrea
7	chr15:58860800-58863800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:58860800-58864800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:58860800-58865600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:58860800-58865600	Weak transcription	Fetal Thymus	thymus
11	chr15:58860800-58865800	Weak transcription	Stomach Mucosa	stomach
12	chr15:58860800-58866000	Weak transcription	Thymus	Thymus
13	chr15:58861200-58864000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:58861200-58866200	Weak transcription	Primary T cells from cord blood	blood
15	chr15:58861600-58862400	Enhancers	K562	blood

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