Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11071391	0.80[AMR][1000 genomes]
rs12437457	0.86[AFR][1000 genomes]
rs12906714	0.80[AMR][1000 genomes]
rs12907237	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12908645	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12913969	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12917577	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17301857	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17301864	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2242063	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2242066	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28427123	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28458188	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28515698	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28524122	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28602186	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36017602	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6074	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62005260	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs871804	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:58864200-58867800	Enhancers	HepG2	liver
3	chr15:58864800-58867800	Enhancers	Fetal Intestine Large	intestine
4	chr15:58865000-58867200	Enhancers	Fetal Intestine Small	intestine
5	chr15:58865000-58867200	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr15:58865400-58867800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:58865600-58867000	Enhancers	Liver	Liver
8	chr15:58865600-58867800	Enhancers	Duodenum Mucosa	Duodenum
9	chr15:58865600-58868000	Enhancers	Fetal Thymus	thymus
10	chr15:58865800-58867000	Enhancers	Stomach Mucosa	stomach
11	chr15:58866000-58867600	Enhancers	Thymus	Thymus
12	chr15:58866200-58867400	Enhancers	Primary T cells from cord blood	blood
13	chr15:58866400-58867800	Enhancers	A549	lung
14	chr15:58866600-58867000	Enhancers	Primary T helper cells fromperipheralblood	blood

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