Variant report

Variant	rs62005260
Chromosome Location	chr15:58864952-58864953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11071391	0.80[AMR][1000 genomes]
rs12906714	0.80[AMR][1000 genomes]
rs12907237	0.80[AMR][1000 genomes]
rs12908645	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12913969	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12917577	0.80[AMR][1000 genomes]
rs17301857	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301864	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2242063	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2242066	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28427123	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28458188	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28515698	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28524122	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28569241	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28602186	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36017602	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6074	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs871804	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58853200-58865000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:58859000-58865600	Weak transcription	Liver	Liver
4	chr15:58860800-58865600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:58860800-58865600	Weak transcription	Fetal Thymus	thymus
6	chr15:58860800-58865800	Weak transcription	Stomach Mucosa	stomach
7	chr15:58860800-58866000	Weak transcription	Thymus	Thymus
8	chr15:58861200-58866200	Weak transcription	Primary T cells from cord blood	blood
9	chr15:58864200-58867800	Enhancers	HepG2	liver
10	chr15:58864800-58865000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:58864800-58867800	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links