The 2.0 version of rSNPBase

Variant report

Variant rs28428635
Chromosome Location chr19:57078424-57078425
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:57077400-57078600 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
2 chr19:57077400-57079000 Active TSS Primary T cells from cord blood blood
3 chr19:57077400-57079200 Active TSS Brain Inferior Temporal Lobe brain
4 chr19:57077400-57079400 Active TSS Brain Anterior Caudate brain
5 chr19:57077400-57079400 Active TSS Brain Hippocampus Middle brain
6 chr19:57077400-57080000 ZNF genes & repeats GM12878-XiMat blood
7 chr19:57077600-57079200 Active TSS Primary T helper naive cells from peripheral blood blood
8 chr19:57077600-57079600 Active TSS Aorta Aorta
9 chr19:57077600-57079800 Active TSS Rectal Smooth Muscle rectum
10 chr19:57077600-57082600 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
11 chr19:57077800-57078600 ZNF genes & repeats Colonic Mucosa Colon
12 chr19:57077800-57079200 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
13 chr19:57077800-57079200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
14 chr19:57077800-57079200 Active TSS Left Ventricle heart
15 chr19:57077800-57079200 Active TSS Stomach Mucosa stomach
16 chr19:57077800-57079200 Active TSS Stomach Smooth Muscle stomach
17 chr19:57077800-57079400 Active TSS iPS-18 Cell Line embryonic stem cell
18 chr19:57077800-57079400 Active TSS Primary T killer memory cells from peripheral blood blood
19 chr19:57077800-57079400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
20 chr19:57077800-57079400 Active TSS Right Atrium heart
21 chr19:57077800-57079400 Active TSS Osteobl bone
22 chr19:57077800-57079800 Active TSS H9 Cell Line embryonic stem cell
23 chr19:57077800-57079800 Active TSS Psoas Muscle Psoas
24 chr19:57077800-57080000 Active TSS iPS-15b Cell Line embryonic stem cell
25 chr19:57078000-57078600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
26 chr19:57078000-57078600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
27 chr19:57078000-57078600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
28 chr19:57078000-57078600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr19:57078000-57078600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
30 chr19:57078000-57078600 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
31 chr19:57078000-57078800 Active TSS Monocytes-CD14+_RO01746 blood
32 chr19:57078000-57079000 Active TSS Fetal Brain Male brain
33 chr19:57078000-57079200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr19:57078000-57079200 Active TSS Primary T killer naive cells fromperipheralblood blood
35 chr19:57078000-57079200 Active TSS Duodenum Mucosa Duodenum
36 chr19:57078000-57079200 Active TSS Duodenum Smooth Muscle Duodenum
37 chr19:57078000-57079200 Active TSS Fetal Brain Female brain
38 chr19:57078000-57079200 Active TSS Fetal Lung lung
39 chr19:57078000-57079200 Active TSS Fetal Muscle Leg muscle
40 chr19:57078000-57079200 Active TSS Rectal Mucosa Donor 31 rectum
41 chr19:57078000-57079200 Active TSS Skeletal Muscle Female skeletal muscle
42 chr19:57078000-57079200 Active TSS Thymus Thymus
43 chr19:57078000-57079200 Active TSS HMEC breast
44 chr19:57078000-57079200 Active TSS HSMM muscle
45 chr19:57078000-57079200 Active TSS NH-A brain
46 chr19:57078000-57079400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr19:57078000-57079400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
48 chr19:57078000-57079400 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr19:57078000-57079400 Active TSS Muscle Satellite Cultured Cells --
50 chr19:57078000-57079400 Active TSS Brain Angular Gyrus brain

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Last update: Aug 31, 2015