Variant report

Variant	rs28430670
Chromosome Location	chr15:83669104-83669105
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83668024..83670019-chr15:83707664..83709687,2	K562	blood:
2	chr15:83611228..83613735-chr15:83667947..83669649,2	MCF-7	breast:
3	chr15:83253377..83255551-chr15:83668447..83670798,2	MCF-7	breast:
4	chr15:83518001..83519058-chr15:83668738..83669954,16	MCF-7	breast:
5	chr15:83518080..83519016-chr15:83668838..83670098,5	MCF-7	breast:
6	chr15:83659649..83661321-chr15:83668906..83670825,2	K562	blood:
7	chr15:83668969..83671305-chr15:83672864..83675852,3	K562	blood:
8	chr15:83638166..83640481-chr15:83668507..83670942,2	MCF-7	breast:
9	chr15:83668658..83671057-chr15:83678964..83681474,2	K562	blood:
10	chr15:83667872..83670020-chr15:83678680..83681172,2	MCF-7	breast:
11	chr15:83658098..83660468-chr15:83666992..83669244,2	MCF-7	breast:
12	chr15:83668786..83671012-chr15:83671933..83674427,4	MCF-7	breast:
13	chr15:83418616..83420865-chr15:83666935..83670708,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000250988	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13329298	0.91[AFR][1000 genomes]
rs28503479	0.82[AFR][1000 genomes]
rs28551018	1.00[AFR][1000 genomes]
rs28580708	1.00[AFR][1000 genomes]
rs28626367	1.00[AFR][1000 genomes]
rs28656253	0.91[AFR][1000 genomes]
rs28669850	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
2	chr15:83655800-83673600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:83655800-83675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:83656000-83675200	Weak transcription	Esophagus	oesophagus
6	chr15:83656200-83673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
8	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
9	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
10	chr15:83656600-83674400	Weak transcription	HepG2	liver
11	chr15:83657600-83673800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:83657800-83673800	Weak transcription	Brain Germinal Matrix	brain
13	chr15:83658000-83673600	Weak transcription	Fetal Brain Female	brain
14	chr15:83658000-83675000	Weak transcription	Lung	lung
15	chr15:83658000-83675200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:83658000-83679000	Weak transcription	Gastric	stomach
17	chr15:83658200-83673600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:83658200-83674400	Weak transcription	Ovary	ovary
19	chr15:83658200-83676000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:83658600-83674200	Weak transcription	Dnd41	blood
21	chr15:83659800-83673600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:83659800-83675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:83659800-83675600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:83659800-83675600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:83660800-83672400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:83661000-83673000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:83661200-83673000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:83661400-83672200	Weak transcription	Fetal Intestine Large	intestine
29	chr15:83664800-83674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:83665600-83679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:83668000-83669200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr15:83668200-83669200	Enhancers	Brain Angular Gyrus	brain
33	chr15:83668400-83669200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr15:83668400-83669200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:83668400-83673600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:83668400-83674000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:83668600-83669200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr15:83668600-83669200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr15:83668600-83669200	Flanking Active TSS	Fetal Lung	lung
40	chr15:83668600-83669400	Enhancers	Primary B cells from peripheral blood	blood
41	chr15:83668600-83669400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:83668600-83669400	Enhancers	Brain Substantia Nigra	brain
43	chr15:83668800-83669200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:83668800-83669200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:83668800-83669200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr15:83668800-83669200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:83668800-83669200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:83668800-83669200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:83668800-83669200	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr15:83668800-83669200	Flanking Active TSS	Rectal Smooth Muscle	rectum

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