Variant report

Variant	rs28551018
Chromosome Location	chr15:83668530-83668531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83668024..83670019-chr15:83707664..83709687,2	K562	blood:
2	chr15:83611228..83613735-chr15:83667947..83669649,2	MCF-7	breast:
3	chr15:83253377..83255551-chr15:83668447..83670798,2	MCF-7	breast:
4	chr15:83638166..83640481-chr15:83668507..83670942,2	MCF-7	breast:
5	chr15:83516534..83519160-chr15:83667420..83668959,2	MCF-7	breast:
6	chr15:83667872..83670020-chr15:83678680..83681172,2	MCF-7	breast:
7	chr15:83658098..83660468-chr15:83666992..83669244,2	MCF-7	breast:
8	chr15:83418616..83420865-chr15:83666935..83670708,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13329298	0.91[AFR][1000 genomes]
rs28430670	1.00[AFR][1000 genomes]
rs28503479	0.82[AFR][1000 genomes]
rs28580708	1.00[AFR][1000 genomes]
rs28626367	1.00[AFR][1000 genomes]
rs28656253	0.91[AFR][1000 genomes]
rs28669850	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3372741	chr15:83665898-83668896	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
2	chr15:83655800-83673600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:83655800-83675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:83656000-83668600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:83656000-83669000	Weak transcription	Left Ventricle	heart
7	chr15:83656000-83669000	Weak transcription	Right Atrium	heart
8	chr15:83656000-83675200	Weak transcription	Esophagus	oesophagus
9	chr15:83656200-83668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:83656200-83668600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:83656200-83668600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:83656200-83668800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:83656200-83669000	Weak transcription	Colonic Mucosa	Colon
14	chr15:83656200-83669000	Weak transcription	HMEC	breast
15	chr15:83656200-83669000	Weak transcription	HSMMtube	muscle
16	chr15:83656200-83669000	Weak transcription	NHLF	lung
17	chr15:83656200-83673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
19	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
20	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:83656400-83668600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:83656400-83668800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:83656400-83669000	Weak transcription	Fetal Kidney	kidney
25	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
26	chr15:83656600-83668600	Weak transcription	Brain Substantia Nigra	brain
27	chr15:83656600-83668800	Weak transcription	GM12878-XiMat	blood
28	chr15:83656600-83669000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:83656600-83669000	Weak transcription	Thymus	Thymus
30	chr15:83656600-83674400	Weak transcription	HepG2	liver
31	chr15:83656800-83668800	Weak transcription	Small Intestine	intestine
32	chr15:83657600-83669000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:83657600-83669000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:83657600-83673800	Weak transcription	Fetal Intestine Small	intestine
35	chr15:83657800-83673800	Weak transcription	Brain Germinal Matrix	brain
36	chr15:83658000-83669000	Weak transcription	NHEK	skin
37	chr15:83658000-83673600	Weak transcription	Fetal Brain Female	brain
38	chr15:83658000-83675000	Weak transcription	Lung	lung
39	chr15:83658000-83675200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:83658000-83679000	Weak transcription	Gastric	stomach
41	chr15:83658200-83668600	Weak transcription	Primary T cells from cord blood	blood
42	chr15:83658200-83668600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:83658200-83668800	Weak transcription	Fetal Thymus	thymus
44	chr15:83658200-83673600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr15:83658200-83674400	Weak transcription	Ovary	ovary
46	chr15:83658200-83676000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:83658400-83669000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:83658600-83668600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:83658600-83668600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:83658600-83668800	Weak transcription	Muscle Satellite Cultured Cells	--

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