Variant report

Variant	rs28503479
Chromosome Location	chr15:83607833-83607834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83592380..83594110-chr15:83606547..83609252,2	MCF-7	breast:
2	chr15:83601981..83604800-chr15:83605972..83608317,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28430670	0.82[AFR][1000 genomes]
rs28551018	0.82[AFR][1000 genomes]
rs28580708	0.82[AFR][1000 genomes]
rs28626367	0.82[AFR][1000 genomes]
rs28669850	0.82[AFR][1000 genomes]
rs28677018	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83592600-83610600	Weak transcription	Liver	Liver
4	chr15:83598600-83608600	Enhancers	Pancreas	Pancrea
5	chr15:83602000-83608200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:83606200-83611600	Weak transcription	A549	lung
7	chr15:83606400-83610400	Weak transcription	HMEC	breast
8	chr15:83606600-83610200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:83606600-83610200	Weak transcription	Esophagus	oesophagus
10	chr15:83606600-83610800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:83606600-83611000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:83606600-83611200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:83606600-83611200	Weak transcription	HSMM	muscle
14	chr15:83606600-83611200	Weak transcription	NH-A	brain
15	chr15:83606600-83613200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:83606600-83618800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:83606600-83620000	Weak transcription	Right Ventricle	heart
18	chr15:83606800-83611200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:83606800-83611400	Weak transcription	HSMMtube	muscle
20	chr15:83606800-83611600	Weak transcription	Left Ventricle	heart
21	chr15:83607200-83610800	Weak transcription	Psoas Muscle	Psoas
22	chr15:83607600-83610600	Weak transcription	Gastric	stomach
23	chr15:83607600-83610600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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