Variant report

Variant	rs28431025
Chromosome Location	chr7:137205717-137205718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137205678..137207528-chr7:137211827..137214394,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10236148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10254089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263289	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272788	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276067	1.00[AMR][1000 genomes]
rs10276225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277326	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1528101	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17372605	1.00[AMR][1000 genomes]
rs2049679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457245	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28559937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28561942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59388471	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467710	1.00[EUR][1000 genomes]
rs6977097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7787693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137195800-137205800	Weak transcription	Osteobl	bone
3	chr7:137195800-137206000	Weak transcription	HSMM	muscle
4	chr7:137204200-137208600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:137204600-137206600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:137204600-137209400	Weak transcription	NH-A	brain
7	chr7:137205200-137205800	Enhancers	Fetal Brain Male	brain
8	chr7:137205200-137206800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137205200-137222400	Weak transcription	HSMMtube	muscle
10	chr7:137205400-137208000	Weak transcription	Fetal Heart	heart
11	chr7:137205400-137208800	Weak transcription	Fetal Brain Female	brain
12	chr7:137205600-137206800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:137205600-137206800	Strong transcription	Muscle Satellite Cultured Cells	--

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