Variant report

Variant	rs1528101
Chromosome Location	chr7:137193485-137193486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10236148	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237813	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10254089	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262297	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263289	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276067	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10276225	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10480524	1.00[CEU][hapmap]
rs17169223	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17372605	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2049679	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431025	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457245	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28559937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28561942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59388471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467710	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6977097	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778800	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7781490	1.00[CEU][hapmap]
rs7787693	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs834093	1.00[CEU][hapmap]
rs834099	1.00[CEU][hapmap]
rs834439	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137191600-137196600	Enhancers	Fetal Heart	heart
3	chr7:137192400-137194400	Enhancers	HUVEC	blood vessel
4	chr7:137192400-137194400	Enhancers	NH-A	brain
5	chr7:137192400-137194600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137192600-137194200	Enhancers	NHEK	skin
7	chr7:137192600-137194400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:137192800-137194000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:137192800-137194200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:137193000-137194400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:137193000-137195000	Enhancers	HMEC	breast
12	chr7:137193200-137193600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:137193200-137194000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:137193200-137194000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:137193200-137194200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137193200-137194200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:137193200-137194400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137193200-137194400	Enhancers	HSMM	muscle
19	chr7:137193200-137194400	Enhancers	HSMMtube	muscle
20	chr7:137193200-137194600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr7:137193400-137193600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:137193400-137193600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr7:137193400-137193600	Enhancers	Fetal Stomach	stomach
24	chr7:137193400-137193600	Flanking Active TSS	Osteobl	bone
25	chr7:137193400-137193800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:137193400-137194200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:137193400-137194200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr7:137193400-137194200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:137193400-137194200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:137193400-137194400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:137193400-137194400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:137193400-137194400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:137193400-137194400	Enhancers	NHLF	lung
34	chr7:137193400-137194600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:137193400-137195800	Enhancers	NHDF-Ad	bronchial

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