Variant report

Variant	rs7781490
Chromosome Location	chr7:137187798-137187799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10226880	0.81[JPT][hapmap]
rs10236148	1.00[CEU][hapmap]
rs10237813	1.00[CEU][hapmap]
rs10246490	0.90[JPT][hapmap]
rs10254089	1.00[CEU][hapmap]
rs10260210	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10262297	1.00[CEU][hapmap]
rs10276067	1.00[CEU][hapmap]
rs10276225	1.00[CEU][hapmap]
rs10480524	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1097033	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1358445	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1358446	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1358447	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1364367	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525043	0.81[ASN][1000 genomes]
rs1525044	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525045	0.81[JPT][hapmap]
rs1525046	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525047	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525048	0.81[ASN][1000 genomes]
rs1525049	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1528101	1.00[CEU][hapmap]
rs1614024	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1615692	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1627230	0.90[JPT][hapmap]
rs1628676	0.81[JPT][hapmap]
rs1629172	0.81[ASN][1000 genomes]
rs1632142	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646364	0.81[ASN][1000 genomes]
rs1646365	0.81[JPT][hapmap]
rs1646366	0.81[JPT][hapmap]
rs1646371	0.81[ASN][1000 genomes]
rs1646372	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646373	0.81[ASN][1000 genomes]
rs1646375	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646376	0.81[ASN][1000 genomes]
rs1646377	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646378	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646381	0.81[ASN][1000 genomes]
rs1646382	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646383	0.81[ASN][1000 genomes]
rs1646384	0.81[ASN][1000 genomes]
rs1646385	0.81[ASN][1000 genomes]
rs1646386	0.81[ASN][1000 genomes]
rs1646387	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646388	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646390	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646393	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646397	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646400	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1646401	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17169223	1.00[CEU][hapmap]
rs17169262	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723085	0.81[JPT][hapmap]
rs1723086	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723087	0.84[CHB][hapmap]
rs1723088	0.81[ASN][1000 genomes]
rs1723089	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723090	0.81[ASN][1000 genomes]
rs1723091	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723093	0.81[JPT][hapmap]
rs1723094	0.81[ASN][1000 genomes]
rs1723095	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723096	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723098	0.81[JPT][hapmap]
rs1723100	0.81[JPT][hapmap]
rs1723103	0.81[ASN][1000 genomes]
rs1723106	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723107	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723108	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1723109	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723119	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723120	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723122	0.81[ASN][1000 genomes]
rs1723123	0.81[ASN][1000 genomes]
rs1728441	0.81[ASN][1000 genomes]
rs1728442	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728443	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728452	0.81[JPT][hapmap]
rs1728476	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1728491	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728495	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728496	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728497	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1728498	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17372605	1.00[CEU][hapmap]
rs2293547	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2293548	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2293549	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2550981	0.81[ASN][1000 genomes]
rs2692002	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2692003	0.81[ASN][1000 genomes]
rs2692006	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2692007	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2692008	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs28401380	0.85[ASN][1000 genomes]
rs28653652	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28690097	0.88[ASN][1000 genomes]
rs28711988	0.85[ASN][1000 genomes]
rs3857867	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4412317	0.88[ASN][1000 genomes]
rs6467709	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6467710	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6946246	0.85[ASN][1000 genomes]
rs6963894	0.85[ASN][1000 genomes]
rs6964340	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6964439	0.85[ASN][1000 genomes]
rs6964837	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6977097	1.00[CEU][hapmap]
rs73728712	0.81[ASN][1000 genomes]
rs73728713	0.81[ASN][1000 genomes]
rs7787693	1.00[CEU][hapmap]
rs834051	0.81[ASN][1000 genomes]
rs834052	0.81[ASN][1000 genomes]
rs834055	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs834056	0.81[ASN][1000 genomes]
rs834057	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs834058	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs834059	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs834060	0.81[JPT][hapmap]
rs834061	0.81[JPT][hapmap]
rs834062	0.81[JPT][hapmap]
rs834067	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs834069	0.84[ASN][1000 genomes]
rs834070	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834071	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834073	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834074	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834075	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs834076	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834077	0.85[ASN][1000 genomes]
rs834078	0.85[ASN][1000 genomes]
rs834079	0.85[ASN][1000 genomes]
rs834081	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834082	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834083	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834084	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834086	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs834087	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834088	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs834089	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834090	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834092	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834093	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs834094	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs834099	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs834431	0.90[JPT][hapmap]
rs834432	0.90[JPT][hapmap]
rs834433	0.90[JPT][hapmap]
rs834436	0.90[JPT][hapmap]
rs834438	0.84[EUR][1000 genomes]
rs834439	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs834441	0.84[EUR][1000 genomes]
rs834442	0.84[EUR][1000 genomes]
rs864434	0.81[JPT][hapmap]
rs865021	0.90[JPT][hapmap]
rs883222	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs967592	0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137167800-137192800	Weak transcription	Osteobl	bone
3	chr7:137170200-137193000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:137179400-137193200	Weak transcription	HSMM	muscle
5	chr7:137183000-137193200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:137184200-137193200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:137185800-137188400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:137186800-137187800	Enhancers	NHDF-Ad	bronchial
9	chr7:137187200-137188200	Enhancers	Fetal Heart	heart
10	chr7:137187200-137192400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:137187400-137187800	Enhancers	HSMMtube	muscle

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