Variant report

Variant	rs883222
Chromosome Location	chr7:137205851-137205852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137205678..137207528-chr7:137211827..137214394,2	K562	blood:

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10226880	0.81[CHB][hapmap]
rs10246490	0.88[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10252668	0.89[EUR][1000 genomes]
rs10260210	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261618	0.89[EUR][1000 genomes]
rs10264172	0.89[EUR][1000 genomes]
rs10480524	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs1097033	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1358445	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358446	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358447	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364367	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1525043	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1525044	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1525045	0.81[CHB][hapmap]
rs1525046	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1525047	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1525048	0.96[ASN][1000 genomes]
rs1525049	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1614024	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1615692	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1627230	0.88[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1628676	0.81[CHB][hapmap]
rs1629172	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1632142	0.88[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646364	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646365	0.81[CHB][hapmap]
rs1646366	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1646371	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646372	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646373	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646375	0.87[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646376	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646377	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646378	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646379	0.83[AMR][1000 genomes]
rs1646380	0.86[AMR][1000 genomes]
rs1646381	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646382	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646383	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646384	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646385	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646386	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646387	0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646388	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646389	0.87[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1646390	0.86[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646393	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646395	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1646397	0.86[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646400	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646401	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1646402	0.81[CHB][hapmap]
rs1646403	0.94[ASN][1000 genomes]
rs17169237	0.89[EUR][1000 genomes]
rs17169262	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723085	0.81[CHB][hapmap]
rs1723086	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723087	0.82[JPT][hapmap]
rs1723088	0.96[ASN][1000 genomes]
rs1723089	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723090	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723091	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723093	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1723094	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723095	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723096	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723098	0.81[CHB][hapmap]
rs1723100	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1723101	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1723102	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1723103	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723104	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1723106	0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723107	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723108	0.96[ASN][1000 genomes]
rs1723109	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723119	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723120	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723122	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723123	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728441	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728442	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728443	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728451	0.86[ASN][1000 genomes]
rs1728452	0.81[CHB][hapmap]
rs1728476	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1728491	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728493	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1728495	0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728496	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728497	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1728498	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2293547	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293548	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293549	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2550977	0.82[ASN][1000 genomes]
rs2550979	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2550981	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2691999	0.81[CHB][hapmap]
rs2692001	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2692002	0.88[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2692003	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2692006	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2692007	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2692008	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28401380	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521198	0.89[EUR][1000 genomes]
rs28653652	1.00[ASN][1000 genomes]
rs28690097	0.97[ASN][1000 genomes]
rs28711988	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758372	0.89[EUR][1000 genomes]
rs3857867	0.86[CHB][hapmap]
rs4412317	0.97[ASN][1000 genomes]
rs59024585	0.89[EUR][1000 genomes]
rs6467709	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6467710	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs6945142	0.89[EUR][1000 genomes]
rs6945473	0.89[EUR][1000 genomes]
rs6946246	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963894	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964340	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6964439	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964837	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449424	0.89[EUR][1000 genomes]
rs73449434	0.89[EUR][1000 genomes]
rs73453514	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73728712	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73728713	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7781490	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs834051	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834052	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834054	0.86[CHB][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs834055	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834056	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834057	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834058	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs834059	0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs834060	0.81[CHB][hapmap]
rs834061	0.81[CHB][hapmap]
rs834062	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs834067	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs834069	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs834070	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834071	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs834073	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834074	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834075	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834076	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834078	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834079	1.00[ASN][1000 genomes]
rs834081	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834082	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834083	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834084	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834086	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834087	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834088	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834089	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834090	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834092	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs834093	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834094	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs834431	0.87[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs834432	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs834433	0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs834435	0.88[ASN][1000 genomes]
rs834436	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs834441	0.86[ASN][1000 genomes]
rs834442	0.88[ASN][1000 genomes]
rs834445	0.93[ASN][1000 genomes]
rs864434	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs865021	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs967592	0.88[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137195800-137206000	Weak transcription	HSMM	muscle
3	chr7:137204200-137208600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:137204600-137206600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:137204600-137209400	Weak transcription	NH-A	brain
6	chr7:137205200-137206800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:137205200-137222400	Weak transcription	HSMMtube	muscle
8	chr7:137205400-137208000	Weak transcription	Fetal Heart	heart
9	chr7:137205400-137208800	Weak transcription	Fetal Brain Female	brain
10	chr7:137205600-137206800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:137205600-137206800	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr7:137205800-137206600	Strong transcription	Osteobl	bone
13	chr7:137205800-137207600	Weak transcription	Fetal Brain Male	brain

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