Variant report

Variant	rs834431
Chromosome Location	chr7:137261940-137261941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10226880	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs10246490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10260210	0.87[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10267688	0.94[EUR][1000 genomes]
rs10270097	1.00[CEU][hapmap]
rs10280229	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10480524	0.86[CHB][hapmap]
rs1097033	0.86[CHB][hapmap]
rs1358445	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1358446	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1358447	0.93[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1364367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1525043	0.93[ASN][1000 genomes]
rs1525044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1525045	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1525046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1525047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1525048	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1525049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1614024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1615692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1627230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1628676	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1629172	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1632142	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1646364	0.93[ASN][1000 genomes]
rs1646365	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1646366	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646371	0.93[ASN][1000 genomes]
rs1646372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646373	0.93[ASN][1000 genomes]
rs1646375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646376	0.93[ASN][1000 genomes]
rs1646377	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646381	0.93[ASN][1000 genomes]
rs1646382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646383	0.93[ASN][1000 genomes]
rs1646384	0.93[ASN][1000 genomes]
rs1646385	0.93[ASN][1000 genomes]
rs1646386	0.93[ASN][1000 genomes]
rs1646387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646389	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1646390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646395	0.91[ASN][1000 genomes]
rs1646397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646398	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1646400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1646402	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs1646403	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17169273	1.00[CEU][hapmap]
rs17169278	1.00[CEU][hapmap]
rs1723085	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1723086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723087	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1723088	0.93[ASN][1000 genomes]
rs1723089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723090	0.93[ASN][1000 genomes]
rs1723091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723093	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723094	0.93[ASN][1000 genomes]
rs1723095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723098	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1723100	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723101	0.87[ASN][1000 genomes]
rs1723102	0.87[ASN][1000 genomes]
rs1723103	0.93[ASN][1000 genomes]
rs1723104	0.91[ASN][1000 genomes]
rs1723106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723108	0.93[ASN][1000 genomes]
rs1723109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1723122	0.93[ASN][1000 genomes]
rs1723123	0.93[ASN][1000 genomes]
rs1728441	0.93[ASN][1000 genomes]
rs1728442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728450	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1728451	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1728452	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1728453	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1728476	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1728491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728493	0.91[ASN][1000 genomes]
rs1728495	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1728498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2293547	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2293548	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs2293549	0.93[CHB][hapmap]
rs2550979	0.91[ASN][1000 genomes]
rs2550981	0.93[ASN][1000 genomes]
rs2691999	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs2692001	0.87[ASN][1000 genomes]
rs2692002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2692003	0.93[ASN][1000 genomes]
rs2692006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2692007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2692008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28401380	0.89[ASN][1000 genomes]
rs28653652	0.89[ASN][1000 genomes]
rs28690097	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28711988	0.89[ASN][1000 genomes]
rs3857867	0.84[CHB][hapmap]
rs4412317	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467709	0.85[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467710	0.93[CHB][hapmap]
rs6946246	0.89[ASN][1000 genomes]
rs6963894	0.89[ASN][1000 genomes]
rs6964340	0.86[CHB][hapmap]
rs6964439	0.89[ASN][1000 genomes]
rs6964837	0.93[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs73453514	0.91[ASN][1000 genomes]
rs73728712	0.93[ASN][1000 genomes]
rs73728713	0.93[ASN][1000 genomes]
rs7781490	0.90[JPT][hapmap]
rs7784757	1.00[CEU][hapmap]
rs834051	0.93[ASN][1000 genomes]
rs834052	0.93[ASN][1000 genomes]
rs834054	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs834055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs834056	0.93[ASN][1000 genomes]
rs834057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs834058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs834059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs834060	0.85[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834061	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs834062	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834063	0.82[CEU][hapmap]
rs834067	0.85[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs834069	0.88[ASN][1000 genomes]
rs834070	0.93[CHB][hapmap]
rs834071	0.86[CHB][hapmap]
rs834073	0.93[CHB][hapmap]
rs834074	0.86[CHB][hapmap]
rs834075	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs834076	0.86[CHB][hapmap]
rs834077	0.89[ASN][1000 genomes]
rs834078	0.89[ASN][1000 genomes]
rs834079	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs834081	0.93[CHB][hapmap]
rs834082	0.93[CHB][hapmap]
rs834083	0.86[CHB][hapmap]
rs834084	0.86[CHB][hapmap]
rs834086	0.93[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs834087	0.93[CHB][hapmap]
rs834088	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs834089	0.86[CHB][hapmap]
rs834090	0.86[CHB][hapmap]
rs834092	0.93[CHB][hapmap]
rs834093	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs834094	0.86[CHB][hapmap]
rs834432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs834433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs834435	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs834436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs834441	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs834442	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs834443	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs834444	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs834445	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs834446	0.94[EUR][1000 genomes]
rs834447	0.92[EUR][1000 genomes]
rs863082	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs864434	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs865021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs883222	0.87[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs967592	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137224800-137262400	Weak transcription	HSMM	muscle
4	chr7:137237200-137264000	Weak transcription	NH-A	brain
5	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
6	chr7:137249400-137262800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137249800-137265000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:137251000-137264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain
10	chr7:137257400-137264400	Weak transcription	NHDF-Ad	bronchial
11	chr7:137257600-137262400	Weak transcription	Osteobl	bone
12	chr7:137257600-137262600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:137257600-137264400	Weak transcription	Fetal Heart	heart
14	chr7:137259600-137264200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:137260000-137262000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:137260400-137274200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:137261000-137262000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:137261000-137264400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:137261200-137262400	Enhancers	HMEC	breast
20	chr7:137261400-137262000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:137261800-137262200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:137261800-137262600	Genic enhancers	Muscle Satellite Cultured Cells	--
23	chr7:137261800-137264800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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