Variant report

Variant	rs834093
Chromosome Location	chr7:137210014-137210015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10226880	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10236148	1.00[CEU][hapmap]
rs10237813	1.00[CEU][hapmap]
rs10246490	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10254089	1.00[CEU][hapmap]
rs10260210	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10262297	1.00[CEU][hapmap]
rs10276067	1.00[CEU][hapmap]
rs10276225	1.00[CEU][hapmap]
rs10480524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1097033	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1358445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1358446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1358447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1364367	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1525043	0.96[ASN][1000 genomes]
rs1525044	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1525045	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1525046	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1525047	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1525048	0.96[ASN][1000 genomes]
rs1525049	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1528101	1.00[CEU][hapmap]
rs1614024	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1615692	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1627230	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1628676	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1629172	0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs1632142	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646364	0.96[ASN][1000 genomes]
rs1646365	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1646366	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1646371	0.96[ASN][1000 genomes]
rs1646372	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646373	0.96[ASN][1000 genomes]
rs1646375	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646376	0.96[ASN][1000 genomes]
rs1646377	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646378	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646381	0.96[ASN][1000 genomes]
rs1646382	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646383	0.96[ASN][1000 genomes]
rs1646384	0.96[ASN][1000 genomes]
rs1646385	0.96[ASN][1000 genomes]
rs1646386	0.96[ASN][1000 genomes]
rs1646387	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646388	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646389	0.92[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1646390	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646393	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646395	0.94[ASN][1000 genomes]
rs1646397	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646398	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1646400	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646401	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1646402	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1646403	0.94[ASN][1000 genomes]
rs17169223	1.00[CEU][hapmap]
rs17169262	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723085	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1723086	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723087	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1723088	0.96[ASN][1000 genomes]
rs1723089	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723090	0.96[ASN][1000 genomes]
rs1723091	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723093	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1723094	0.96[ASN][1000 genomes]
rs1723095	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723096	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723098	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1723100	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1723101	0.90[ASN][1000 genomes]
rs1723102	0.90[ASN][1000 genomes]
rs1723103	0.96[ASN][1000 genomes]
rs1723104	0.94[ASN][1000 genomes]
rs1723106	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723107	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723108	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1723109	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723119	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723120	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1723122	0.96[ASN][1000 genomes]
rs1723123	0.96[ASN][1000 genomes]
rs1728441	0.96[ASN][1000 genomes]
rs1728442	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728443	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728451	0.86[ASN][1000 genomes]
rs1728452	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1728476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1728491	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728493	0.94[ASN][1000 genomes]
rs1728495	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728496	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728497	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1728498	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17372605	1.00[CEU][hapmap]
rs2293547	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2293548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2293549	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2550977	0.82[ASN][1000 genomes]
rs2550979	0.94[ASN][1000 genomes]
rs2550981	0.96[ASN][1000 genomes]
rs2691999	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2692001	0.88[ASN][1000 genomes]
rs2692002	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2692003	0.96[ASN][1000 genomes]
rs2692006	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2692007	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2692008	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28401380	1.00[ASN][1000 genomes]
rs28653652	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28690097	0.97[ASN][1000 genomes]
rs28711988	1.00[ASN][1000 genomes]
rs3857867	0.92[CHB][hapmap]
rs4412317	0.97[ASN][1000 genomes]
rs6467709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6467710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6946246	1.00[ASN][1000 genomes]
rs6963894	1.00[ASN][1000 genomes]
rs6964340	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs6964439	1.00[ASN][1000 genomes]
rs6964837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6977097	1.00[CEU][hapmap]
rs73453514	0.94[ASN][1000 genomes]
rs73728712	0.96[ASN][1000 genomes]
rs73728713	0.96[ASN][1000 genomes]
rs7781490	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7787693	1.00[CEU][hapmap]
rs834051	0.96[ASN][1000 genomes]
rs834052	0.96[ASN][1000 genomes]
rs834054	0.92[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs834055	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs834056	0.96[ASN][1000 genomes]
rs834057	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs834058	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs834059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs834060	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs834061	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs834062	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs834067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs834069	0.99[ASN][1000 genomes]
rs834070	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834071	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs834073	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834074	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834075	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834076	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834077	1.00[ASN][1000 genomes]
rs834078	1.00[ASN][1000 genomes]
rs834079	1.00[ASN][1000 genomes]
rs834081	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834082	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834083	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834084	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834087	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834088	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834089	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834090	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834092	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834094	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs834099	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs834431	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs834432	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs834433	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs834435	0.88[ASN][1000 genomes]
rs834436	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834439	1.00[CEU][hapmap]
rs834441	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs834442	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs834445	0.93[ASN][1000 genomes]
rs864434	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs865021	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs883222	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs967592	0.93[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137205200-137222400	Weak transcription	HSMMtube	muscle
2	chr7:137206600-137222200	Weak transcription	Osteobl	bone
3	chr7:137206600-137222400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:137206800-137214400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:137206800-137218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:137206800-137222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137207200-137232600	Weak transcription	Aorta	Aorta
8	chr7:137208800-137211000	Weak transcription	Fetal Heart	heart

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