Variant report

Variant	rs834062
Chromosome Location	chr7:137227650-137227651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137226774..137229451-chr7:137231798..137234078,3	K562	blood:

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10226880	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10246490	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10249241	0.95[ASN][1000 genomes]
rs10260210	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10480524	0.93[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1097033	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13437885	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1358445	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs1358446	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs1358447	0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs1364367	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1525044	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1525045	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525046	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1525047	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1525049	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs1614024	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1615692	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1627230	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1628676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1632142	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646365	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1646366	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1646372	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs1646375	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs1646377	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646378	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646382	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646387	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1646388	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646389	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs1646390	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1646393	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1646398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1646399	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1646400	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646401	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1646402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17169262	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723086	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723089	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1723091	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723092	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723093	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723095	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723096	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723099	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723100	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723106	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1723107	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723109	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723119	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1723120	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1728442	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1728443	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs1728452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1728476	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs1728491	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1728494	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1728495	0.90[JPT][hapmap]
rs1728496	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1728497	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1728498	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs2293547	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs2293548	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2293549	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2691999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2692002	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2692006	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2692007	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2692008	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap]
rs3857867	0.92[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6467709	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6467710	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs6957428	0.93[ASN][1000 genomes]
rs6964340	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6964837	0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs7781490	0.81[JPT][hapmap]
rs834054	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs834055	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834057	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834058	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834059	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs834060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834061	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834064	0.81[AFR][1000 genomes]
rs834065	0.81[AFR][1000 genomes]
rs834066	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834067	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs834068	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs834070	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs834071	0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs834073	0.84[ASW][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834074	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834075	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs834076	0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834081	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834082	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834083	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834084	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834086	0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs834087	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834088	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs834089	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834090	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834091	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834092	0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834093	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs834094	0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834431	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834432	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834433	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs834436	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs864434	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs865021	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs883222	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs967592	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137207200-137232600	Weak transcription	Aorta	Aorta
2	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137216600-137236600	Weak transcription	Brain Anterior Caudate	brain
4	chr7:137224200-137236200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
6	chr7:137224600-137232400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:137224800-137262400	Weak transcription	HSMM	muscle
8	chr7:137225000-137229600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:137225000-137231400	Weak transcription	Osteobl	bone
10	chr7:137225000-137232600	Weak transcription	NH-A	brain
11	chr7:137225200-137231400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:137225600-137232400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:137225800-137240600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:137226800-137228000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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