Variant report

Variant	rs834066
Chromosome Location	chr7:137222400-137222401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10226880	0.91[ASN][1000 genomes]
rs10249241	0.97[ASN][1000 genomes]
rs10480524	0.95[ASN][1000 genomes]
rs1097033	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13437885	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1525045	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1628676	0.98[ASN][1000 genomes]
rs1646365	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1646366	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1646398	0.98[ASN][1000 genomes]
rs1646399	0.98[ASN][1000 genomes]
rs1646402	0.98[ASN][1000 genomes]
rs1723085	0.98[ASN][1000 genomes]
rs1723087	0.98[ASN][1000 genomes]
rs1723092	0.98[ASN][1000 genomes]
rs1723093	0.98[ASN][1000 genomes]
rs1723098	0.98[ASN][1000 genomes]
rs1723099	0.98[ASN][1000 genomes]
rs1723100	0.98[ASN][1000 genomes]
rs1728452	0.98[ASN][1000 genomes]
rs1728494	0.98[ASN][1000 genomes]
rs2293549	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2691999	0.98[ASN][1000 genomes]
rs3857867	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6467710	0.97[ASN][1000 genomes]
rs6957428	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6964340	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834060	0.98[ASN][1000 genomes]
rs834061	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834062	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834068	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834070	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834074	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834081	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834082	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834083	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834084	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834087	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834089	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834090	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834091	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834092	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834094	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs864434	0.98[ASN][1000 genomes]
rs967592	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137205200-137222400	Weak transcription	HSMMtube	muscle
2	chr7:137206600-137222400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:137206800-137222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:137207200-137232600	Weak transcription	Aorta	Aorta
5	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:137216600-137236600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:137219000-137222400	Weak transcription	NH-A	brain
8	chr7:137219600-137222400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137221800-137223000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:137222000-137222400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:137222000-137223200	Weak transcription	Fetal Heart	heart
12	chr7:137222200-137223200	Enhancers	Osteobl	bone
13	chr7:137222400-137222600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:137222400-137222600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:137222400-137222600	Enhancers	HSMMtube	muscle
16	chr7:137222400-137222600	Flanking Active TSS	NH-A	brain
17	chr7:137222400-137222800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:137222400-137223000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:137222400-137224200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:137222400-137224200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:137222400-137224600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:137222400-137224800	Enhancers	HSMM	muscle
23	chr7:137222400-137224800	Enhancers	NHDF-Ad	bronchial
24	chr7:137222400-137224800	Enhancers	NHLF	lung
25	chr7:137222400-137225200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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