Variant report

Variant	rs13437885
Chromosome Location	chr7:137198857-137198858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10226880	0.88[ASN][1000 genomes]
rs10249241	1.00[ASN][1000 genomes]
rs10480524	0.98[ASN][1000 genomes]
rs1097033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525045	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1628676	0.95[ASN][1000 genomes]
rs1646365	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1646366	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1646398	0.95[ASN][1000 genomes]
rs1646399	0.95[ASN][1000 genomes]
rs1646402	0.95[ASN][1000 genomes]
rs1723085	0.95[ASN][1000 genomes]
rs1723087	0.95[ASN][1000 genomes]
rs1723092	0.95[ASN][1000 genomes]
rs1723093	0.95[ASN][1000 genomes]
rs1723098	0.95[ASN][1000 genomes]
rs1723099	0.95[ASN][1000 genomes]
rs1723100	0.95[ASN][1000 genomes]
rs1728452	0.95[ASN][1000 genomes]
rs1728494	0.95[ASN][1000 genomes]
rs2293549	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2691999	0.95[ASN][1000 genomes]
rs3857867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6467710	1.00[ASN][1000 genomes]
rs6957428	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6964340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834060	0.95[ASN][1000 genomes]
rs834061	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834062	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs834066	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs834068	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834070	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834071	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs834073	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834074	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834076	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834081	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834082	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834083	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834084	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834087	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834089	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834090	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834091	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834094	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs864434	0.95[ASN][1000 genomes]
rs967592	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv981587	chr7:137197447-137200940	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137194200-137204600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137194200-137205600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:137195800-137205800	Weak transcription	Osteobl	bone
5	chr7:137195800-137206000	Weak transcription	HSMM	muscle
6	chr7:137196200-137205600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:137198600-137204200	Weak transcription	Fetal Brain Male	brain
8	chr7:137198600-137204600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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