Variant report

Variant	rs834059
Chromosome Location	chr7:137229997-137229998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10226880	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs10246490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10260210	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10267688	0.94[EUR][1000 genomes]
rs10270097	1.00[CEU][hapmap]
rs10280229	1.00[CEU][hapmap]
rs10480524	0.93[CHB][hapmap]
rs1097033	0.93[CHB][hapmap]
rs1358445	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1358446	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1358447	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1364367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1525043	0.88[ASN][1000 genomes]
rs1525044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1525045	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1525046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1525047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1525048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1525049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1614024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1615692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1627230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1628676	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1629172	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1632142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1646364	0.88[ASN][1000 genomes]
rs1646365	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1646366	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1646371	0.88[ASN][1000 genomes]
rs1646372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646373	0.88[ASN][1000 genomes]
rs1646375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646376	0.88[ASN][1000 genomes]
rs1646377	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646381	0.88[ASN][1000 genomes]
rs1646382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646383	0.88[ASN][1000 genomes]
rs1646384	0.88[ASN][1000 genomes]
rs1646385	0.88[ASN][1000 genomes]
rs1646386	0.88[ASN][1000 genomes]
rs1646387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646389	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1646390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646395	0.87[ASN][1000 genomes]
rs1646397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646398	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1646400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1646402	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs1646403	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17169273	1.00[CEU][hapmap]
rs17169278	1.00[CEU][hapmap]
rs1723085	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1723086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723087	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1723088	0.88[ASN][1000 genomes]
rs1723089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723090	0.88[ASN][1000 genomes]
rs1723091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723093	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1723094	0.88[ASN][1000 genomes]
rs1723095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723098	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1723100	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1723101	0.83[ASN][1000 genomes]
rs1723102	0.83[ASN][1000 genomes]
rs1723103	0.88[ASN][1000 genomes]
rs1723104	0.87[ASN][1000 genomes]
rs1723106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723108	0.88[ASN][1000 genomes]
rs1723109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1723122	0.88[ASN][1000 genomes]
rs1723123	0.88[ASN][1000 genomes]
rs1728441	0.88[ASN][1000 genomes]
rs1728442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728450	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1728452	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1728453	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1728476	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1728491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728493	0.87[ASN][1000 genomes]
rs1728495	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1728498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2293547	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2293548	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2293549	1.00[CHB][hapmap]
rs2550979	0.87[ASN][1000 genomes]
rs2550981	0.88[ASN][1000 genomes]
rs2691999	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2692001	0.81[ASN][1000 genomes]
rs2692002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2692003	0.88[ASN][1000 genomes]
rs2692006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2692007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2692008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28401380	0.84[ASN][1000 genomes]
rs28653652	0.84[ASN][1000 genomes]
rs28690097	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28711988	0.84[ASN][1000 genomes]
rs3857867	0.92[CHB][hapmap]
rs4412317	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6467709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467710	1.00[CHB][hapmap]
rs6946246	0.84[ASN][1000 genomes]
rs6963894	0.84[ASN][1000 genomes]
rs6964340	0.93[CHB][hapmap]
rs6964439	0.84[ASN][1000 genomes]
rs6964837	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs706562	0.88[YRI][hapmap]
rs706568	0.82[YRI][hapmap]
rs73453514	0.87[ASN][1000 genomes]
rs73728712	0.88[ASN][1000 genomes]
rs73728713	0.88[ASN][1000 genomes]
rs7781490	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs7784757	1.00[CEU][hapmap]
rs834051	0.88[ASN][1000 genomes]
rs834052	0.88[ASN][1000 genomes]
rs834054	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs834055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834056	0.88[ASN][1000 genomes]
rs834057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834060	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs834061	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs834062	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs834063	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs834067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs834069	0.83[ASN][1000 genomes]
rs834070	1.00[CHB][hapmap]
rs834071	0.93[CHB][hapmap]
rs834073	1.00[CHB][hapmap]
rs834074	0.93[CHB][hapmap]
rs834075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs834076	0.93[CHB][hapmap]
rs834077	0.84[ASN][1000 genomes]
rs834078	0.84[ASN][1000 genomes]
rs834079	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs834081	1.00[CHB][hapmap]
rs834082	1.00[CHB][hapmap]
rs834083	0.93[CHB][hapmap]
rs834084	0.93[CHB][hapmap]
rs834086	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs834087	1.00[CHB][hapmap]
rs834088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs834089	0.93[CHB][hapmap]
rs834090	0.93[CHB][hapmap]
rs834092	1.00[CHB][hapmap]
rs834093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs834094	0.93[CHB][hapmap]
rs834431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs834432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs834433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs834435	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs834436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs834442	0.81[ASN][1000 genomes]
rs834443	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs834444	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs834445	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs834446	0.86[EUR][1000 genomes]
rs834447	0.85[EUR][1000 genomes]
rs863082	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs864434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs865021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs883222	0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs967592	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137207200-137232600	Weak transcription	Aorta	Aorta
2	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137216600-137236600	Weak transcription	Brain Anterior Caudate	brain
4	chr7:137224200-137236200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
6	chr7:137224600-137232400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:137224800-137262400	Weak transcription	HSMM	muscle
8	chr7:137225000-137231400	Weak transcription	Osteobl	bone
9	chr7:137225000-137232600	Weak transcription	NH-A	brain
10	chr7:137225200-137231400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:137225600-137232400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:137225800-137240600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:137228600-137230800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:137228800-137231600	Enhancers	Fetal Stomach	stomach
15	chr7:137229000-137231200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:137229400-137230400	Enhancers	HepG2	liver
17	chr7:137229600-137230000	Enhancers	Fetal Intestine Small	intestine
18	chr7:137229600-137230200	Enhancers	Fetal Lung	lung
19	chr7:137229600-137230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:137229600-137230600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:137229600-137231000	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr7:137229800-137230400	Enhancers	Rectal Smooth Muscle	rectum

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