Variant report

Variant	rs706568
Chromosome Location	chr7:137284480-137284481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10081252	1.00[JPT][hapmap]
rs10229086	1.00[JPT][hapmap]
rs10233537	1.00[JPT][hapmap]
rs10237704	1.00[JPT][hapmap]
rs10238276	1.00[JPT][hapmap]
rs10238305	1.00[JPT][hapmap]
rs10242488	1.00[JPT][hapmap]
rs10245413	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10246829	1.00[JPT][hapmap]
rs10246952	1.00[JPT][hapmap]
rs10252668	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10255388	1.00[JPT][hapmap]
rs10255937	1.00[JPT][hapmap]
rs10261618	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10264172	1.00[JPT][hapmap]
rs10264413	1.00[JPT][hapmap]
rs10271043	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10273321	1.00[JPT][hapmap]
rs10274366	1.00[ASN][1000 genomes]
rs10274702	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10277872	1.00[JPT][hapmap]
rs10279489	1.00[JPT][hapmap]
rs10280229	1.00[JPT][hapmap]
rs10281244	1.00[JPT][hapmap]
rs1627230	0.85[YRI][hapmap]
rs1632142	0.81[YRI][hapmap]
rs17169237	1.00[JPT][hapmap]
rs17169284	1.00[JPT][hapmap]
rs17169298	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17169313	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17169324	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1728450	1.00[JPT][hapmap]
rs1728453	1.00[JPT][hapmap]
rs28451058	0.88[ASN][1000 genomes]
rs28683654	0.94[ASN][1000 genomes]
rs3800605	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800609	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3800610	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3800611	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3823547	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6467709	0.84[ASW][hapmap];0.81[YRI][hapmap]
rs6945473	1.00[JPT][hapmap]
rs6949094	1.00[CEU][hapmap]
rs6949210	0.88[ASN][1000 genomes]
rs6949568	0.88[ASN][1000 genomes]
rs6969227	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6969358	0.88[ASN][1000 genomes]
rs697596	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs706560	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs706561	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs706562	1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs706567	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73453584	0.94[ASN][1000 genomes]
rs73453598	0.94[ASN][1000 genomes]
rs7781327	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7800321	1.00[JPT][hapmap]
rs834059	0.82[YRI][hapmap]
rs834067	0.94[ASW][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap]
rs834069	1.00[JPT][hapmap]
rs834075	0.89[YRI][hapmap]
rs834095	0.88[ASN][1000 genomes]
rs834099	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834100	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834438	0.88[ASN][1000 genomes]
rs834439	0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs834444	1.00[JPT][hapmap]
rs834447	1.00[JPT][hapmap]
rs863082	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137270200-137291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137271400-137286600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:137277000-137287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:137277000-137287600	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:137277200-137296200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:137277200-137326800	Weak transcription	Osteobl	bone
7	chr7:137277400-137287600	Weak transcription	Brain Anterior Caudate	brain
8	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain
9	chr7:137277600-137315400	Weak transcription	NH-A	brain
10	chr7:137277800-137287600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:137277800-137292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:137278400-137304200	Weak transcription	Aorta	Aorta
13	chr7:137281800-137284800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
15	chr7:137283400-137302600	Weak transcription	HSMM	muscle
16	chr7:137283800-137284600	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr7:137283800-137285200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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