Variant report

Variant	rs28457245
Chromosome Location	chr7:137282073-137282074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10236148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237813	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10254089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262297	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263289	0.91[AMR][1000 genomes]
rs10272788	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276067	0.91[AMR][1000 genomes]
rs10276225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277326	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1528101	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169223	0.91[AMR][1000 genomes]
rs17372605	0.91[AMR][1000 genomes]
rs2049679	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431025	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513312	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28559937	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28561942	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572065	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695936	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59388471	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467710	1.00[EUR][1000 genomes]
rs6977097	0.91[AMR][1000 genomes]
rs7778800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7787693	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807128	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137270200-137291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137271400-137286600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:137277000-137282400	Weak transcription	HSMMtube	muscle
4	chr7:137277000-137287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:137277000-137287600	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:137277200-137296200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137277200-137326800	Weak transcription	Osteobl	bone
8	chr7:137277400-137282400	Weak transcription	HSMM	muscle
9	chr7:137277400-137283800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137277400-137287600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain
12	chr7:137277600-137315400	Weak transcription	NH-A	brain
13	chr7:137277800-137282400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:137277800-137287600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:137277800-137292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137278400-137304200	Weak transcription	Aorta	Aorta
17	chr7:137281800-137284800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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