Variant report

Variant	rs28433691
Chromosome Location	chr15:33021390-33021391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17228641	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28436730	0.87[EUR][1000 genomes]
rs28473724	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28482374	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28564029	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28574716	0.81[EUR][1000 genomes]
rs28615915	0.81[EUR][1000 genomes]
rs28616589	0.81[EUR][1000 genomes]
rs28617440	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28767884	0.87[EUR][1000 genomes]
rs28768389	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28840420	0.88[EUR][1000 genomes]
rs28855511	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3207357	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7175986	0.87[EUR][1000 genomes]
rs8041794	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9920024	0.82[EUR][1000 genomes]
rs9920792	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33012000-33023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:33012400-33023200	Weak transcription	HSMM	muscle
3	chr15:33013400-33022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:33013600-33022000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:33013600-33023400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:33015000-33022000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:33017000-33024200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:33019400-33022200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:33020400-33022000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr15:33020400-33022600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:33020400-33023400	Weak transcription	HSMMtube	muscle
12	chr15:33020600-33021800	Strong transcription	NHDF-Ad	bronchial
13	chr15:33020800-33022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:33021000-33021800	Weak transcription	NH-A	brain
15	chr15:33021000-33022000	Strong transcription	Osteobl	bone
16	chr15:33021000-33022200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:33021000-33022200	Weak transcription	NHLF	lung
18	chr15:33021000-33023200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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