Variant report

Variant	rs3207357
Chromosome Location	chr15:33010483-33010484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FMN1-1	chr15:33010302-33010565	ENSG00000259721.1
2	lnc-FMN1-1	chr15:33009471-33011208	ENSG00000259721.1
3	lnc-FMN1-1	chr15:33010302-33010565	NR_109767

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17228641	0.96[EUR][1000 genomes]
rs28433691	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28436730	0.93[EUR][1000 genomes]
rs28439346	0.86[EUR][1000 genomes]
rs28473724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28482374	0.96[EUR][1000 genomes]
rs28564029	0.96[EUR][1000 genomes]
rs28569405	0.83[EUR][1000 genomes]
rs28574716	0.81[EUR][1000 genomes]
rs28585618	0.84[EUR][1000 genomes]
rs28615915	0.87[EUR][1000 genomes]
rs28616589	0.81[EUR][1000 genomes]
rs28617440	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28767884	0.93[EUR][1000 genomes]
rs28768389	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28840420	0.94[EUR][1000 genomes]
rs7175986	0.93[EUR][1000 genomes]
rs9920024	0.96[EUR][1000 genomes]
rs9920792	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33008400-33012600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:33008600-33010600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
3	chr15:33008600-33011800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr15:33008800-33011600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr15:33008800-33012000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr15:33008800-33012000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr15:33008800-33012200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
8	chr15:33008800-33012600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:33009000-33010600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
10	chr15:33009000-33011800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:33009000-33012000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr15:33009000-33012000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr15:33009000-33012000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
14	chr15:33009000-33012200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:33009000-33013000	Bivalent/Poised TSS	NHLF	lung
16	chr15:33009200-33010600	Bivalent Enhancer	Stomach Mucosa	stomach
17	chr15:33009200-33011400	Bivalent/Poised TSS	Psoas Muscle	Psoas
18	chr15:33009200-33011600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
19	chr15:33009200-33012000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:33009200-33012200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr15:33009200-33012200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:33009400-33010600	Bivalent/Poised TSS	Aorta	Aorta
23	chr15:33009400-33010800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
24	chr15:33009400-33011000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr15:33009400-33011000	Active TSS	Right Atrium	heart
26	chr15:33009400-33011400	Bivalent Enhancer	Fetal Brain Male	brain
27	chr15:33009400-33011600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:33009400-33011600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:33009400-33011800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:33009400-33011800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:33009400-33011800	Bivalent Enhancer	Placenta	Placenta
32	chr15:33009400-33012000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr15:33009400-33012000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr15:33009400-33012400	Active TSS	HSMM	muscle
35	chr15:33009400-33012600	Active TSS	NHDF-Ad	bronchial
36	chr15:33009400-33012800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr15:33009600-33010600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
38	chr15:33009600-33010600	Bivalent/Poised TSS	Ovary	ovary
39	chr15:33009600-33010600	Active TSS	Osteobl	bone
40	chr15:33009600-33010800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:33009600-33010800	Enhancers	Liver	Liver
42	chr15:33009600-33011000	Active TSS	Muscle Satellite Cultured Cells	--
43	chr15:33009600-33011000	Bivalent/Poised TSS	NHEK	skin
44	chr15:33009600-33011200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:33009600-33011400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr15:33009600-33011400	Active TSS	Brain Substantia Nigra	brain
47	chr15:33009600-33011400	Bivalent Enhancer	Fetal Thymus	thymus
48	chr15:33009600-33011600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:33009600-33011800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:33009600-33011800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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