Variant report

Variant	rs28840420
Chromosome Location	chr15:33029986-33029987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17228641	0.99[EUR][1000 genomes]
rs17525764	0.82[EUR][1000 genomes]
rs17816363	0.87[AMR][1000 genomes]
rs28433691	0.88[EUR][1000 genomes]
rs28436730	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28439346	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28473724	0.94[EUR][1000 genomes]
rs28482374	0.99[EUR][1000 genomes]
rs28564029	0.99[EUR][1000 genomes]
rs28569405	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28574716	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28585618	0.90[EUR][1000 genomes]
rs28615915	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28616589	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28617440	0.99[EUR][1000 genomes]
rs28767884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28768389	0.99[EUR][1000 genomes]
rs28855511	0.82[EUR][1000 genomes]
rs3207357	0.94[EUR][1000 genomes]
rs7175986	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8041794	0.82[EUR][1000 genomes]
rs9920024	0.90[EUR][1000 genomes]
rs9920792	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33023600-33035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:33025600-33037800	Weak transcription	HSMMtube	muscle
3	chr15:33025800-33035600	Weak transcription	HSMM	muscle
4	chr15:33027200-33030200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:33028600-33034000	Weak transcription	NH-A	brain
6	chr15:33028800-33032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:33029000-33035200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:33029200-33030000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:33029200-33030600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:33029200-33032000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:33029200-33035600	Weak transcription	Osteobl	bone
12	chr15:33029200-33035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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