Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58784059..58785575-chr5:58790965..58792487,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10514861	1.00[ASN][1000 genomes]
rs10514862	1.00[ASN][1000 genomes]
rs10805515	0.90[ASN][1000 genomes]
rs11746896	1.00[ASN][1000 genomes]
rs16889907	1.00[ASN][1000 genomes]
rs16889908	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889919	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889920	0.97[ASN][1000 genomes]
rs16889921	0.97[ASN][1000 genomes]
rs28725359	0.98[EUR][1000 genomes]
rs35987304	0.90[ASN][1000 genomes]
rs58922738	0.94[EUR][1000 genomes]
rs6450520	0.97[ASN][1000 genomes]
rs6450521	0.84[ASN][1000 genomes]
rs66605058	1.00[ASN][1000 genomes]
rs67306207	1.00[ASN][1000 genomes]
rs6885378	0.97[ASN][1000 genomes]
rs6896121	0.98[EUR][1000 genomes]
rs7700365	0.97[ASN][1000 genomes]
rs7707043	0.97[ASN][1000 genomes]
rs7717802	0.87[ASN][1000 genomes]
rs7717819	0.97[ASN][1000 genomes]
rs7717821	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031631	chr5:58783629-59015470	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58784000-58792200	Weak transcription	Psoas Muscle	Psoas
2	chr5:58784000-58793200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:58784600-58797000	Weak transcription	Fetal Lung	lung
4	chr5:58787000-58803800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58790000-58792000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:58790200-58801200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:58791200-58793200	Strong transcription	A549	lung
8	chr5:58791400-58797800	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:58791600-58792600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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