Variant report

Variant	rs28725359
Chromosome Location	chr5:58792919-58792920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13180690	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16889908	1.00[EUR][1000 genomes]
rs16889919	1.00[EUR][1000 genomes]
rs17796734	0.86[ASN][1000 genomes]
rs28435556	0.98[EUR][1000 genomes]
rs58922738	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031631	chr5:58783629-59015470	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58784000-58793200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:58784600-58797000	Weak transcription	Fetal Lung	lung
3	chr5:58787000-58803800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58790200-58801200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:58791200-58793200	Strong transcription	A549	lung
6	chr5:58791400-58797800	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:58792600-58795800	Weak transcription	Psoas Muscle	Psoas
8	chr5:58792600-58795800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:58792600-58799000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:58792800-58793000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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