Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10514861	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs10514862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11746896	0.99[EUR][1000 genomes]
rs13180690	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs167161	1.00[CHB][hapmap]
rs16889907	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs16889919	1.00[JPT][hapmap]
rs16889920	0.98[EUR][1000 genomes]
rs16889921	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs17796734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28725359	1.00[ASN][1000 genomes]
rs58922738	1.00[ASN][1000 genomes]
rs6450520	0.99[EUR][1000 genomes]
rs66605058	0.99[EUR][1000 genomes]
rs66741919	0.91[EUR][1000 genomes]
rs67306207	0.99[EUR][1000 genomes]
rs6885378	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs6896121	1.00[ASN][1000 genomes]
rs7700365	0.98[EUR][1000 genomes]
rs7707043	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7717819	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031631	chr5:58783629-59015470	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58787000-58803800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:58790200-58801200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:58796600-58800600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:58796600-58813200	Weak transcription	Psoas Muscle	Psoas
5	chr5:58797000-58799400	Enhancers	A549	lung
6	chr5:58797600-58800600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:58798200-58801000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:58798600-58799600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:58798800-58799800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:58799000-58799400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:58799000-58799600	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search: