Variant report
Variant | rs28438609 |
---|---|
Chromosome Location | chr4:147140931-147140932 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POLR2A | chr4:147140821-147141005 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000250673 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10000860 | 0.93[EUR][1000 genomes] |
rs10000861 | 0.93[EUR][1000 genomes] |
rs10000865 | 0.93[EUR][1000 genomes] |
rs10010356 | 0.81[EUR][1000 genomes] |
rs10013229 | 0.93[EUR][1000 genomes] |
rs10015161 | 0.93[EUR][1000 genomes] |
rs10021707 | 0.93[EUR][1000 genomes] |
rs10028478 | 0.93[EUR][1000 genomes] |
rs10029288 | 0.93[EUR][1000 genomes] |
rs10029293 | 0.81[EUR][1000 genomes] |
rs10031419 | 0.93[EUR][1000 genomes] |
rs10519778 | 0.93[EUR][1000 genomes] |
rs11932480 | 0.93[EUR][1000 genomes] |
rs11936772 | 0.93[EUR][1000 genomes] |
rs11946104 | 0.93[EUR][1000 genomes] |
rs13435847 | 0.93[EUR][1000 genomes] |
rs13435855 | 0.93[EUR][1000 genomes] |
rs17021122 | 0.86[EUR][1000 genomes] |
rs17021126 | 0.86[EUR][1000 genomes] |
rs17021129 | 0.86[EUR][1000 genomes] |
rs17021149 | 0.93[EUR][1000 genomes] |
rs17021150 | 0.93[EUR][1000 genomes] |
rs17021152 | 0.93[EUR][1000 genomes] |
rs17021155 | 0.86[EUR][1000 genomes] |
rs17021253 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2082096 | 0.86[EUR][1000 genomes] |
rs2115788 | 0.93[EUR][1000 genomes] |
rs28440804 | 0.86[EUR][1000 genomes] |
rs28495089 | 0.93[EUR][1000 genomes] |
rs28535638 | 0.93[EUR][1000 genomes] |
rs28602879 | 0.93[EUR][1000 genomes] |
rs28772704 | 0.93[EUR][1000 genomes] |
rs28794473 | 0.93[EUR][1000 genomes] |
rs28862630 | 0.93[EUR][1000 genomes] |
rs60125851 | 0.86[EUR][1000 genomes] |
rs60129600 | 0.86[EUR][1000 genomes] |
rs6821054 | 0.86[EUR][1000 genomes] |
rs6824434 | 0.86[EUR][1000 genomes] |
rs6841212 | 0.86[EUR][1000 genomes] |
rs6841228 | 0.86[EUR][1000 genomes] |
rs6841426 | 0.86[EUR][1000 genomes] |
rs6846309 | 0.86[EUR][1000 genomes] |
rs6852939 | 0.86[EUR][1000 genomes] |
rs7356451 | 0.93[EUR][1000 genomes] |
rs7356484 | 0.93[EUR][1000 genomes] |
rs73855513 | 1.00[ASN][1000 genomes] |
rs7655300 | 0.93[EUR][1000 genomes] |
rs7663853 | 0.93[EUR][1000 genomes] |
rs7671076 | 0.93[EUR][1000 genomes] |
rs7680354 | 0.93[EUR][1000 genomes] |
rs7681269 | 0.93[EUR][1000 genomes] |
rs7681704 | 0.93[EUR][1000 genomes] |
rs7691151 | 0.93[EUR][1000 genomes] |
rs7693341 | 0.86[EUR][1000 genomes] |
rs7698706 | 0.93[EUR][1000 genomes] |
rs867775 | 0.86[EUR][1000 genomes] |
rs883857 | 0.86[EUR][1000 genomes] |
rs9284682 | 0.86[EUR][1000 genomes] |
rs9308197 | 0.93[EUR][1000 genomes] |
rs9308198 | 0.93[EUR][1000 genomes] |
rs9884598 | 0.93[EUR][1000 genomes] |
rs9992451 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv461674 | chr4:147047072-147143572 | Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv595650 | chr4:147047072-147143572 | Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv461675 | chr4:147116864-147768206 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
4 | nsv595651 | chr4:147116864-147768206 | Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:147114000-147144800 | Weak transcription | Gastric | stomach |
2 | chr4:147136600-147144400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |