Variant report

Variant	rs17021149
Chromosome Location	chr4:147080704-147080705
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10000860	1.00[EUR][1000 genomes]
rs10000861	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10000865	1.00[EUR][1000 genomes]
rs10010356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10013229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015161	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021707	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10028478	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029293	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10031419	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519778	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes]
rs11931059	1.00[CEU][hapmap]
rs11932480	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13435847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13435855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021122	0.93[EUR][1000 genomes]
rs17021126	0.93[EUR][1000 genomes]
rs17021129	0.93[EUR][1000 genomes]
rs17021150	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021155	0.93[EUR][1000 genomes]
rs17021188	0.86[ASW][hapmap]
rs17021253	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2082096	0.93[EUR][1000 genomes]
rs2115788	1.00[EUR][1000 genomes]
rs28438609	0.93[EUR][1000 genomes]
rs28440804	0.93[EUR][1000 genomes]
rs28495089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28535638	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602879	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28772704	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28794473	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28862630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3775498	0.87[ASW][hapmap];0.95[YRI][hapmap]
rs60125851	0.93[EUR][1000 genomes]
rs60129600	0.93[EUR][1000 genomes]
rs6821054	0.93[EUR][1000 genomes]
rs6824434	0.93[EUR][1000 genomes]
rs6841212	0.93[EUR][1000 genomes]
rs6841228	0.93[EUR][1000 genomes]
rs6841426	0.93[EUR][1000 genomes]
rs6846309	0.93[EUR][1000 genomes]
rs6852939	0.93[EUR][1000 genomes]
rs7356451	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356484	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7663853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7671076	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7680354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681704	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693341	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7698706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867775	0.93[EUR][1000 genomes]
rs883857	0.93[EUR][1000 genomes]
rs9284682	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9308197	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884598	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9992451	0.93[EUR][1000 genomes]
rs9997106	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461674	chr4:147047072-147143572	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595650	chr4:147047072-147143572	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1018859	chr4:147055618-147138397	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147073400-147081000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:147079800-147081400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:147080000-147080800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:147080400-147081400	Flanking Active TSS	GM12878-XiMat	blood
5	chr4:147080600-147081200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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